confocal-microscopy
There are 1 repository under confocal-microscopy topic.
JaneliaSciComp / workstation
Janelia Workstation
Language:Java 21WeisongZhao / AdaptiveOptics.simulation
Simulation for sensorless adaptive optics (Confocal microscopy, Modal method)
Language:MATLAB 19pmascalchi / ImageJ_Export-LIF-as-Individual-Images
ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)
Language:ImageJ Macro 9- Language:Python 5
- laser-scanning-microscopy
melchisedech333 / laser-scanning-microscopy
🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.
Language:PHP 4 - Language:R 4
AlexSath / prodivis
A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.
Language:Python 3lauraluebbert / confocal_z-stack_analysis
Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.
Language:Jupyter Notebook 2- Language:Python 2
dcluet / FIND-CURVE
Automated determination of cell membrane curvature from 3D stacks using the radius of osculating circle approach.
Language:Java 1- Language:MATLAB 1
- diagnosztikai_celu_orvosi_kepalkotas
gabboraron / diagnosztikai_celu_orvosi_kepalkotas
Képalkotás szenzor adatokból
SaradhaVenkatachalapathy / Chromsome-intermingling-region-indentifcation-and-characterisation-of-protein-levels
Analysis performed for the Belyaeva et.al PNAS 2017 Paper
Language:R 1SharifAmit / CalDenoise
[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.
Language:Python 1amarcog / Immunofluorescence_2D_Quantification
Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.
Language:ImageJ Macro 0AnshumanJaysingh / cell_segment_intensity_distribution
The MatLab code takes confocal TIFF images of cells as input and plots the distribution of different channels after segmentation of the image into features bases on the type of organelles. For getting the membrane features, distance transform is used to obtain a continuos membrane region.
Language:MATLAB 0rjlopez2 / AnlysisOfWaves
Repository containing methods applied for the analysis of the data in the SERCA publication
Language:R 0SchornacklabSLCU / Actin_difference_maps
Quantification of actin dynamics using difference maps (Vidali et al, 2010, The Plant Cell)
Language:R 0Analysis of actin dynamics using the method described by Higaki et al. (2009).
Language:R 0Biophysical-Engineering-Group / GeoV
3D surface reconstruction from confocal microscopy stacks. This software package has been created for the anaylis of 3D vesicle shapes.
Language:Python
