There are 6 repositories under adaptive-optics topic.
Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.
Modal Shack-Hartmann wavefront sensor toolbox for MATLAB
This is the open source repository for our SIGGRAPH 2018 paper "Megapixel Adaptive Optics: Towards Correcting Large-scale Distortions in Computational Cameras".
Extended Nijboer-Zernike (ENZ) theory toolbox for Python
Simulation for sensorless adaptive optics (Confocal microscopy, Modal method)
Deformable mirror calibration and control library
Correctness tests for AOtools modules and functions.
Spatial light modulator in Python
This project deals with system identification and machine learning of large-scale deformable mirrors used in adaptive optics. I have submitted two papers that deal with this important problem. The approaches can be generalized two other problems of estimating large-scale system with the dynamics described by partial differential equations.
In free-space optical communication, the propagation of a laser beam through the atmosphere causes wavefront distortions that decrease the coupling efficiency (CE) from free space to single-mode fiber. With this MATLAB rutine we verify coupling efficiency using Adaptive Optics
Prediction of Zernike coefficients by artificial intelligence
teaching the functionality of adaptive optics with model
Code that removes residual distortions due to eye motion from images and videos processed via strip or grid registration.
A Fixation Target GUI that uses a secondary monitor (or lightcrafter) as the fixation screen.
A repository containing validated coordinate structure measurements. All of these metrics are designed for Adaptive Optics opthalmoscope images.
Telemetry vizualizer and wavefront reconstructor for KAPAO.
Pretty Accurate Reference Frame Selection
Mirao 52e deformable mirror driver (API) imported into LabView
Framework for adaptive optics data analysis
This code is associated with the paper from Raghavendra et al., "Measurement of retinal blood flow precision in the human eye with multimodal adaptive optics imaging". BOE, 2024. https://doi.org/10.1364/BOE.524944. Made available here is an analysis pipeline for measuring single-cell velocity of blood cells from space-time images.