immunofluorescence

There are 2 repositories under immunofluorescence topic.

• minerva-story

  labsyspharm / minerva-story

  Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

  minervamicroscopyomeimmunofluorescence
  Language:HTML 50

• ciccalab / SIMPLI

  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

  cell-segmentationsingle-cell-analysisimaging-mass-cytometryimmunofluorescencehistological-imagesgatingtissue-analysistissue-classificationhistologybioimage-analysisbioimagingbioimage-toolsbioimage-informaticsmcdimclife-sciences-imageome-tiffimage-analysis-workflows
  Language:R 33
• LKS-Dataset

  cradleai / LKS-Dataset

  This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.

  computer-visiondatasetwhole-slide-imagingimmunofluorescencecvpr2020
  Language:Python 16

• Immunodynamics-Engel-Lab / msiflow

  collection of mass spectrometry imaging workflows

  mass-spectrometry-imagingmultimodalsnakemakeimmunofluorescence
  Language:Python 4

• labsyspharm / minerva-author-ui

  Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

  microscopyimmunofluorescenceomeminerva
  Language:JavaScript 4

• SilMon / NucDetect

  Python interface to detect and quantify intranuclear proteins

  python3image-processingbioinformaticsskimagedigital-image-processingimmunofluorescencedna-damagepyqt5quantificationpythondetectionpypi
  Language:Python 3

• aminnaghdloo / slide-image-utils

  A package for processing immunofluorescence (IF) microscopy image data.

  segmentationmicroscopyimmunofluorescencecell-morphology
  Language:Python 2

• labsyspharm / minerva-cloud

  Minerva Cloud is a novel cloud-native (AWS) platform for high-dimensional microscopy image storage, management, and visualization.

  minervaawscloud-computingmicroscopyomeimmunofluorescence
  Language:Python 2

• christianrickert / CU-IScore

  IHC scoring of multi-channel images

  imagej2macroscoringionpathakoya-biosciencesmulti-channelbatchbio-formatsdabhematoxylinstainingimmunofluorescenceihcimmunohistochemistrymibiscopevectrapolaris
  Language:ImageJ Macro 1

• duke-lungmap-team / odifmap

  A Python library for segmentation and classification of objects in microscopy images

  bioinformaticsclassificationhistologyimage-analysisimmunofluorescencemicroscopypythonsegmentation
  Language:Python 1

• labsyspharm / minerva-cloud-ui

  Minerva Cloud is a novel cloud-based (AWS) software for high-dimensional image management, storage and visualization.

  minervamicroscopyomeimmunofluorescence
  Language:JavaScript 1

• amarcog / Immunofluorescence_2D_Quantification

  Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.

  confocal-microscopyfiji-macroimage-analysisimage-quantizationimmunofluorescencemicroscopy-imagesmultichannel
  Language:ImageJ Macro 0

• duke-lungmap-team / lungmap-pipeline

  Complete analysis pipeline for the segmentation & classification of structures / cells for LungMap images

  bioinformaticsclassificationimage-processingimmunofluorescencepythonsegmentation
  Language:Python 0

• eleni-chr / cell-morphometry

  Morphometric analysis of cells in microscopy images.

  biologyimage-analysisimage-processingimmunocytochemistryimmunofluorescencemicroscopymorphometry
  Language:MATLAB 0

• eleni-chr / NMJ-MN-image-analysis-toolkit

  Morphometric analysis of neuromuscular junction microscopy images, and protein distribution and localisation analysis of immunohistochemically-labelled microscopy images.

  biologyimage-analysisimage-processingimagejimagej-macroimmunofluorescenceimmunohistochemical-imagesmatlabmicroscopymorphometry
  Language:MATLAB 0

• SCCH-KVS / NuclearSegmentationPipeline

  Code for the paper: Deep Learning architectures for generalized immunofluorescence based nuclear image segmentation

  deep-learningneural-networksensemble-machine-learninggenerative-adversarial-networksimage-segmentationimmunofluorescence
  Language:JavaScript 0

• SilMon / DSB-Analysis-Notebook

  A jupyter notebook about DNA double strand break analysis from fluorescence images using Python

  jupyter-notebookpython3skimageimage-processingbioinformaticsimmunofluorescencedna-damage
  Language:Jupyter Notebook 0

• d-wdj / thesis

  nesstemcellrt-qpcrpcrimmunofluorescenceimmunocytochemistry
  Language:Python