immunohistochemical-images

There are 1 repository under immunohistochemical-images topic.

nadeemlab / DeepLIIF
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
multiplex immunohistochemical-images immunohistochemistry deep-learning multitask-learning pathology pathology-image pathology-gan segmentation cell-segmentation cell-biology cloud-native-applications pytorch ai-ready datasets image-segmentation digital-pathology stitching super-resolution whole-slide-imaging
Language:Python 140
keiserlab / plaquebox-paper
Repo for Tang et al, bioRxiv 454793 (2018)
alzheimers-disease machine-learning amlyoid-plaques deep-learning convolutional-neural-networks interpretable-machine-learning explainable-ai dementia immunohistochemical-images pathology medical-image-analysis plaques saliency-map
Language:Jupyter Notebook 36
CamaraLab / STvEA
Spatially-resolved Transcriptomics via Epitope Anchoring
single-cell-rna-seq single-cell-proteomics cytometry-analysis-pipeline immunohistochemical-images
Language:R 16
hansenjn / AdipoQ
A simple toolbox of ImageJ plugins for quantifying adipocyte morphology and function in tissues and in vitro.
adipocyte-differentiation adipocytes adipose-tissue adipose-tissue-segmentation cell-biology fluorescence-microscopy-imaging image-analysis imagej-plugin immunohistochemical-images droplet-analysis droplets-detection lipid-droplets
4
Phil-An / CellMatch
Complete Matlab pipeline for matching in vivo recorded cells post hoc in histology
calcium-imaging matlab histology-images immunohistochemical-images miniscope neuronal-subtypes multimodal-image-registration
Language:MATLAB 4
ds2643 / ichapy
automated analysis of immunohistochemical images
immunohistochemical-images medical-images python computer-vision
Language:Python 2
quqixun / BCIStainer
A stainer translates HE stained slices to IHC stained slices. A solution for Breast Cancer Immunohistochemical Image Generation Challenge.
classifier-guidance deep-learning gan image-to-image-translation immunohistochemical-images
Language:Python 2
jeffock / ihc_cellcount
An immunohistochemistry cell-counting (quantifying) neural network (CSRNet PyTorch) that was trained on KRT14, KRT5, and Ki67 stains (and of course DAPI).
cell-counting history immunohistochemical-images immunohistochemistry machine-learning computer-vision
Language:Jupyter Notebook 1
jmarsil / pygempick
Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).
immunology immunoinformatics immunoglobulin immunohistochemical-images immunocytochemistry gold particle-picking diagnostics image-processing image-filters
Language:Jupyter Notebook 1
eleni-chr / NMJ-MN-image-analysis-toolkit
Morphometric analysis of neuromuscular junction microscopy images, and protein distribution and localisation analysis of immunohistochemically-labelled microscopy images.
biology image-analysis image-processing imagej imagej-macro immunofluorescence immunohistochemical-images matlab microscopy morphometry
Language:MATLAB 0
Software-Engineering-BBSRC-Group-6 / auto-coloc-gui
Image processing desktop GUI tool to automate colocalization analysis across multiple channels on a fluorescence image
image-processing image-recognition colocalization immunohistochemistry immunohistochemical-images machine-learning kmeans-clustering pyqt5 desktop
Language:Python 0
davepruitt / PRV-Cell-Counting
Custom software to allow manual counting of neurons labeled by the pesudorabies (PRV) virus. This software was written for the Texas Biomedical Device Center at UT Dallas. Images must be converted from their native format to the Microsoft "DeepZoom" format. This software relies on Node Webkit and OpenSeadragon.
deepzoom libvips openseadragon ut-dallas prv-cell-counting data-analysis rat pseudorabies-virus histology immunohistochemical-images cells txbdc javascript neuroscience
Language:JavaScript