christacaggiano

celfie

cfDNA cell type of origin estimation

IBD

code for analyzing IBD networks

causal-inference-reading-list

Some papers I've come across on causal inference

exome_processing_pipeline

simple pipeline for processing exome sequencing data using BWA and GATK4

machine_learning_exercises

Machine learning sample jupyter notebooks

process-methylation

ibd-mapping

academic-webpage

jekyll template for simple academic webpage

als-lasso

BSBolt

BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool

caravaggio

playing around with what a NN can learn about a caravaggio painting

cfdna-tims

Code for the analysis of tissue informative markers in cfDNA data

christacaggiano.github.io

my personal website

differential-methylation

code for calling DMRs in cfdna data

GATK_exome_seq

gradient-boosting

helenberger

Academic Webpage for Helen Berger

Human-hormone-seasonality

Code and data repository for the paper "Hormone seasonality in medical records suggests circannual endocrine circuits" by A. Tendler, A. Bar, N. Mendelsohn-Cohen, O. Karin, Y. Korem Kohanim, L. Maimon, T. Milo, M. Raz, A. Mayo, A. Tanay, U. Alon

ibd_calling

intro_to_git

jupyter_notebook_practice

exercise to practice jupyter notebook

MethodsTBS

Targeted Bisulfite Sequencing for Biomarker Discovery

methylation_analysis

Intro to methylation analysis

methylation_processing

simple scripts to process large methylation matrices

misingnoglic.github.io

My website that I finally decided to make

MultiLabLeaderboard

This is a paper reading tracker app for multiple labs to compare their average reading

phecode-assoc

pregnancy_cfdna

SAIGE

statistical-rethinking-exercises

Python implementations of the exercises from the "statistical rethinking" textbook