Mahmoud Ahmed's repositories
intro_data_r
A gentle introduction to data analysis in R
IntegratingDataBioc
Source code for the Bioconductor workshop "Integrating gene expression and DNA-binding data using R/Bioconductor"
targetShop
Source code for the Bioconductor workshop "IIntegrating ChIP-seq and RNA-seq data in R"
chromhmmData
chromhmmData: Chromosome Size, Coordinates and Anchor Files
target_pkg_talk
Code for "target: An R package to Predict Combined Function of Transcription Factors" short talk. BioC Asia 2020.
BuildABiocWorkshop
Template for building a bioconductor workshop package using github actions
cars
a web application for renting cars
chromatin_segmentation_r
Package demo slides, "Chromatin Segmentation Analysis in R"
configs
Config files used to define parameters specific to compute environments at different Institutions
intro_meta_r
Introduction to meta analysis in R
latex_overleaf
An introduction to the basics of LaTeX using Overleaf
MPRA-design-tool
An R script which takes genetic variants and designs probes for massively parallel reporter assays.
NPAModels
R package and data for NPA models
openreviewer
Query openreview API from R
orlistat_meta_analysis
A training program for medical students on evaluating clinical evidence funded by the National Health Insurance Service in Korea
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
segmenterNote
A technical note to describe the segmenter package
stat_rethinking_2022
Statistical Rethinking course winter 2022
targetFlow
target: An R Package to Predict Combined Function of Transcription Factors (workflow article)
TRAPD
Burden testing against public controls
UKBB_200KWES_CVD
Code used for the main analyses of the manuscript Jurgens et al. (2022). Nat Genet.