Theresa Swayne's repositories
stereology
ImageJ scripts for stereology and morphometry
cervix-nerves
Scripts for analysis of whole-slide images stained with DAB
imagej-plugins
Custom plugins and macros for ImageJ and Fiji
percent-dead-cells
Calculate percent dead cells by taking the ratio between counts in two channels
biosensor
Code for image analysis of ratiometric biosensors
cellprofiler
Miscellaneous CellProfiler pipelines and related code
codes-for-Iezza-et-al-2022
The codes I used to generate random sections and run my analysis for stereo logy
contractile-rings
ImageJ scripts for analyzing yeast contractile ring closure
coreusage
Scripts to monitor and summarize usage of core facility instruments
Coursework
Coursework
cp-colocalization
CellProfiler colocalization pipelines
data-analysis
Scripts for processing and plotting data
lizchang
Macros and scripts for the Chang lab
MEN-mito-loc
Analyzing mitochondrial localization of MEN proteins using R
mitograph_scripts
Accessory scripts for Mitograph
napari-training-course
Lectures for a napari training course
nuclei-cytoplasm
Scripts to locate nuclei and analyze nuclear and cytoplasmic fluorescence
nuclei-overlap
ImageJ scripts for analyzing nuclei intensity and overlap in brain sections
random-cells
ImageJ scripts to simulate random cell distributions. Used to test significance of localization patterns.
tissue-cell-counting
Tools for counting cells in tissue sections and comparing with manual counts