Network Neuroscience Lab

neuromaps

A toolbox for comparing brain maps

conn2res

A reservoir computing toolbox for neuroscientists

hansen_receptors

Data and code supporting Hansen et al., 2022 "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"

pypyls

A Python implementation of Partial Least Squares (PLS) decomposition

netneurotools

Useful tools from the Network Neuroscience Lab

suarez_neuromorphicnetworks

Code supporting Suarez et al., 2021 "Learning function from structure in neuromorphic networks". ()

hansen_many_networks

Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health and disease"

markello_ppmisnf

Code supporting the recent preprint Markello et al., 2020

hansen_crossdisorder_vulnerability

Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disorder cortical abnormalities"

hansen_genescognition

Code supporting Hansen et al., 2021 "Mapping gene transcription and neurocognition across human neocortex".

markello_spatialnulls

Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)

abagen

A toolbox for working with Allen Human Brain Atlas microarray expression data

ipn-summer-school

bazinet_assortativity

Code supporting Bazinet et al., 2023, "Assortative mixing in micro-architecturally annotated brain connectomes" (Nature Communications))

markello_transcriptome

Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)

shafiei_megdynamics

Code supporting Shafiei et al., 2023 "Neurophysiological signatures of cortical micro-architecture".

hansen_gene-receptor

Data and code in support of Hansen et al., 2022 "Correspondence between gene expression and neurotransmitter receptor and transporter density in the human brain", NeuroImage

shafiei_megfmrimapping

Code supporting Shafiei et al., 2022 "Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal cortex".

hansen_brainstemfc

Data and code supporting Hansen et al., 2023 bioRxiv "Integrating brainstem and cortical functional architectures"

bazinet_multiscale

Code and documentation supporting Bazinet et al., 2020, "Multiscale communication in cortico-cortical networks"

markello_neuromaps

suarez_connectometaxonomy

Farahani_ALS

Network spreading and local biological vulnerability in amyotrophic lateral sclerosis

liu_meg-scfc

marmoset_connectome

milisav_strength_nulls

Data and code supporting Milisav et al., 2024 "A simulated annealing algorithm for randomizing weighted networks"

nnlab-intro-to-ds

luppi-neurosynth-control

Code for Luppi et al (2024) Nature Biomedical Engineering

liu_fc-pyspi

netneurolab.github.io

Network Neuroscience Lab Website