personalized-medicine

There are 5 repositories under personalized-medicine topic.

• drizopoulos / JMbayes2

  Extended Joint Models for Longitudinal and Survival Data

  mixed-modelslongitudinal-analysissurvival-modelsmulti-statecompeting-risksprediction-modelpersonalized-medicineprecision-medicine
  Language:R 73

• nf-core / hlatyping

  Precision HLA typing from next-generation sequencing data

  hlahla-typingimmunologydnarnaoptitypepersonalized-medicinenf-corenextflowworkflowpipeline
  Language:Nextflow 52

• jaredhuling / personalized

  Methods for subgroup identification / personalized medicine / individualized treatment rules

  subgroup-identificationprecision-medicineheterogeneity-of-treatment-effecttreatment-effectstreatment-scoringpersonalized-medicineindividualized-treatment-rulescausal-inference
  Language:R 31

• bcgsc / pori

  Platform for Oncogenomic Reporting and Interpretation (PORI)

  porigenomicspersonalized-medicine
  Language:Shell 28
• pasmopy

  pasmopy / pasmopy

  Patient-Specific Modeling in Python

  systems-biologycancerpersonalized-medicinekinetic-modelingpatient-specific-modelingpythoncomputational-biologysystems-biology-simulationprecision-medicineprecision-oncologyin-silico-clinical-trialbiochemical-networksdigital-twin
  Language:Python 17

• SkadiEye / deepTL

  Deep Treatment Learning (R)

  treatment-effectsfeature-selectionfeature-importancepersonalized-medicinedeep-learning
  Language:R 15

• bcgsc / pori_graphkb_client

  Front-end web client for the GraphKB project

  personalized-medicineknowledge-basegraphdbgenomicpori
  Language:TypeScript 9

• egeulgen / PANACEA

  Personalized Network-based Anti-Cancer Therapy Appointment

  drugnetwork-analysisoncologypersonalized-mediciner
  Language:R 9
• LLM-Personalized-Medicine

  abilzerian / LLM-Personalized-Medicine

  LLM-Personalized-Medicine

  chatchatbotchatgptgpt-4personalized-medicinepromptprompt-engineeringpromptsaibotchat-applicationchatbotsgpt-3medicineopenaiopenai-chatgptprompt-learningprompt-toolkitprompt-tuningprompting
  8

• bcgsc / pori_ipr_api

  Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

  bioinformaticsgenomicspersonalized-medicinepori
  Language:JavaScript 8

• bcgsc / pori_ipr_client

  Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

  bioinformaticsgenomicspersonalized-medicinepori
  Language:TypeScript 8

• bcgsc / pori_graphkb_python

  Python adapter package for querying the GraphKB API

  bioinformaticsannotationpersonalized-medicinegraphdbpori
  Language:Python 7

• ngiangre / cohorts

  A python package for standardized and reproducible processing, analysis, and integration of clinical proteomics data

  clinicaldata-managementomicspersonalized-medicinepython-package
  Language:Jupyter Notebook 7

• bcgsc / pori_ipr_python

  Python adapter for generating reports uploaded to IPR using the PORI platform

  bioinformaticsgenomicsreportingpersonalized-medicinepori
  Language:Python 6

• Guiquan-27 / Predict_OR

  A machine learning system for identification of ovarian response and deployment of ovarian stimulation strategies in ART

  decision-support-systemivfmachine-learningpersonalized-medicinerovaian-stimulationovarian-response
  5

• bcgsc / pori_graphkb_api

  REST API for the GraphKB project

  genomicsgraphdbknowledge-basepersonalized-medicinepori
  Language:JavaScript 4

• bcgsc / pori_graphkb_parser

  A package for parsing and recreating HGVS-like variant notation used in GraphKB

  genomicsknowledge-basepersonalized-medicinevariant-notationpori
  Language:TypeScript 4

• bcgsc / pori_graphkb_schema

  Shared package between the API and GUI for GraphKB which holds the schema definitions and schema-related functions

  genomicspersonalized-medicineknowledge-basegraphdbpori
  Language:TypeScript 4

• bcgsc / pori_cbioportal

  cBioportal adaptor for creating PORI reports in IPR

  poripersonalized-medicinegenomics
  Language:Python 2

• CHUV-PCL / Nof1Companion-backend

  N-of-1 Companion is a web application designed to facilitate the conduct of N-of-1 therapeutic tests.

  n-of-1personalized-medicine
  Language:TypeScript 2

• cohenoa / Computational-quantification-of-cellular-subpopulations-within-tumors-in-anti-cancer-therapy

  Code to accompany the paper: "Computational quantification and characterization of independently evolving cellular subpopulations within tumors is critical to inhibit anti-cancer therapy resistance"

  bioinformaticscancercomputational-biologypersonalized-medicinecancer-research
  Language:MATLAB 2

• tAndreani / scBCR

  Benchmarking computational methods for B cell receptor reconstruction from single cell RNA-seq data

  benchmarkantibodiessingle-cell-rna-seqb-cell-receptorpersonalized-medicine
  Language:R 2

• valentinoli / pdx

  ML project, EPFL 2019 - Clustering tumor patients based on hormonal response

  machine-learningclusteringunsupervised-learningbreast-cancerhormonestumorpersonalized-medicine
  Language:Jupyter Notebook 2
• CrossTx

  CABSEL / CrossTx

  CrossTx: Cross-cell line Transcriptomic Signature Predictions

  drug-discoverydrug-repurposingdrug-response-predictiongene-expressionpersonalized-medicine
  Language:Jupyter Notebook 1

• CHUV-PCL / Nof1Companion-frontend

  N-of-1 Companion is a web application designed to facilitate the conduct of N-of-1 therapeutic tests.

  n-of-1personalized-medicine
  Language:TypeScript 1

• COVIDAnalytics / covid19_hypertensive_treatments

  Codebase for the manuscript: "Personalized prescription of ACEI/ARBs for hypertensive COVID-19 patients"

  covid-19machine-learninghypertensive-patientspersonalized-medicine
  Language:Python 1

• femiogundare / prostate-cancer-genomics

  Precision Cancer Medicine.

  machine-learningdeep-learninggenomicspersonalized-medicinedrug-discovery
  Language:HTML 1

• arturstat / nof1_issues

  Statistical Issues in the Design and Analysis of Series of N-of-1 Trials

  n-of-1clinical-trialspersonalized-medicinefrequentist-statisticsbayesian-statisticsdecision-analysismonte-carlo-simulation
  Language:SAS 0

• arturstat / shrunk_ite

  Shrunk versus naive individual treatment effects in aggregated n-of-1 trials

  n-of-1clinical-trialspersonalized-medicinefrequentist-statisticsbayesian-statisticsdecision-analysismonte-carlo-simulation
  Language:R 0

• Ayushi22137 / Personalized_Medicine-Redefining_Cancer_Treatment

  Determining the class of cancer-causing mutations using text and genetic data

  cancer-genomicsloglossmachine-learningmulticlass-classificationnlp-machine-learningpca-analysispersonalized-medicinesmotetfidf-text-analysis
  0

• ddomingof / predictme

  A web application for stratification of Alzheimer's and Parkinson's disease patients

  stratificationpatient-classificationpersonalized-medicinebioinformatics
  Language:Jupyter Notebook 0

• rxstudioinc / R-client

  R client to the Rx Studio APIs.

  rstatspkpdpersonalized-medicinepharmacometricsrstats-packageapi-clientsdk
  Language:R 0

• abikesa / epi

  Epi Department: Pitch

  a-prioriaimatrix-algebranpupersonalized-medicinespeedupdateswebapp

• cbib / TrialMatchAI

  TrialMatchAI aims to seamlessly match cancer patients to clinical trials based on their unique genomic and clinical profiles using AI

  artificial-intelligencecancer-genomicsclinical-trialslarge-language-modelspersonalized-medicinepersonalized-recommendationpython
  Language:Jupyter Notebook

• Omneer / omneerplayground

  AI for early detection of neuroscience disorders

  aineurosciencepersonalized-medicine
  Language:Jupyter Notebook