snrna-seq

There are 0 repository under snrna-seq topic.

broadinstitute / Tangram
Spatial alignment of single cell transcriptomic data.
spatial-data visium gene-expression scrna-seq snrna-seq computational-biology
Language:Jupyter Notebook 223
getzlab / scrinvex
Single Cell RNA Intron-Exon counting
scrna-seq snrna-seq bioinformatics
Language:C++ 11
epigen / dea_seurat
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
bioinformatics biomedical-data-science differential-expression-analysis scrna-seq single-cell snakemake snrna-seq visualization workflow volcano-plot
Language:R 10
epigen / scrnaseq_processing_seurat
A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
bioinformatics workflow snakemake scrna-seq biomedical-data-science cite-seq sccrispr-seq 10xgenomics snrna-seq single-cell visualization
Language:R 10
ComunidadBioInfo / cdsb2020
Taller CDSB: Construyendo flujos de trabajo con RStudio y Bioconductor para datos transcriptómicos de single cell (RNA-seq)
bioconductor osca project rstats rstudio snrna-seq workflows workshop
Language:HTML 7
LieberInstitute / DLPFC_snRNAseq
snRNA_seq portion of the spatialDLPFC project
bioconductor rstats snrna-seq spatialdlpfc
Language:HTML 4
LieberInstitute / TREG
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
bioconductor deconvolution rnascope rstats scrna-seq smfish snrna-seq treg
Language:R 4
epigen / mixscape_seurat
A Snakemake workflow for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
bioinformatics biomedical-data-science perturbation-analysis sccrispr-seq scrna-seq single-cell snakemake snrna-seq visualization workflow
Language:R 3
256wangliu / scMAYO
A tool for single cell genomics data processing and analysis
snatac-seq snrna-seq peaks
Language:Shell 0
cembrowskilab / proteinsearch.py
An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.
antibodies histology scrna-seq snrna-seq transcriptomics
Language:Python 0
LieberInstitute / Habenula_Pilot
habenulaPilot project code repository
bulk-rna-seq habenula rna-seq schizophrenia snrna-seq
Language:HTML 0

snrna-seq

broadinstitute / Tangram

getzlab / scrinvex

epigen / dea_seurat

epigen / scrnaseq_processing_seurat

ComunidadBioInfo / cdsb2020

LieberInstitute / DLPFC_snRNAseq

LieberInstitute / TREG

epigen / mixscape_seurat

256wangliu / scMAYO

cembrowskilab / proteinsearch.py

LieberInstitute / Habenula_Pilot