# CRAN mirror
install.packages("cinaRgenesets")
To get bug fix and use a feature from the development version:
# install.packages("devtools")
devtools::install_github("eonurk/cinaR-genesets")
You can use these modules via setting geneset argument in
cinaR:
library(cinaR)
library(cinaRgenesets)
data("VP2008")
cinaR(..., geneset = vp2008)
This package contains 6 genesets curated from different sources.
Immune system related modules from SLE patients published in Nature Communications (2020)
data("VP2008")
Curated from PBMC scRNA-seq data published in here:
data("PBMC.scRNAseq")
These genesets are curated from wikipathways:
data("wiki")
Hand-picked subset of immune related pathways from wikipathways:
data("wiki.immune")
Major cell types curated from DICE database:
data("dice.major")
Activated immune cells curated by Ucarlab and published in here:
data("activated.immune")
You can send pull requests to make your contributions.
- GNU General Public License v3.0