prihoda

AbNumber

Convenience Python APIs for antibody numbering using ANARCI

usum

USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE

ANARCI-pyhmmer-fork

Antibody Numbering and Antigen Receptor ClassIfication

conda

Specifying a conda environment with `environment.yml`

dl_binder_design_fork

dvc

Data Science Version Control - Git for data scientists

EvoBind

In silico directed evolution of peptide binders with AlphaFold

fairseq

Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

ImmuneBuilder-fork

Predict the structure of immune receptor proteins

jupyterlab

Demonstrating how to get JupyterLab working with Binder

Machine-learning-for-proteins

Listing of papers about machine learning for proteins.

marshmallow_dataclass

Automatic generation of marshmallow schemas from dataclasses.

MaskedProteinEnT-fork

miniwdl

A static analysis toolkit for the Workflow Description Language

MolecularNodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

mongoengine-migrate

Migrations for MongoEngine inspired by Django

mRNAid-fork

Mutation_Maker

Application for mutagenic primer design. Facilitates development of biocatalysts (Green Chemistry) and new therapeutic proteins.

nightingale

Data visualisation web components for the life sciences.

osprey-binder

prihoda.github.io

pyfaidx

Efficient pythonic random access to fasta subsequences

readthedocs.org

The source code that powers readthedocs.org

RFdiffusion-fork

Code for running RFdiffusion

RREFinder

Bioinfromatic application for the detection of RREs in protein sequences of interest

shields

Concise, consistent, and legible badges in SVG and raster format

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

streamlit-timeago

Streamlit wrapper of timeago-react to show live-updating time ago

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch, TensorFlow, and JAX.

umap-test