pwwang's repositories

python-varname

Dark magics about variable names in python

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datar

A Grammar of Data Manipulation in python

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pipen

A pipeline framework for python

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immunopipe

Integrative analysis for scTCR- and scRNA-seq data

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biopipen

A set of processes/pipelines for bioinformatics

xqute

A job management system for python

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simplug

A simple plugin system for python with async hooks supported

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datar-numpy

The numpy backend for datar.

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datar-pandas

The pandas backend for datar

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pdtypes

Show data types for pandas data frames in terminal and notebooks

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pipen-args

Command line argument parser for pipen

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pipen-diagram

Draw pipeline diagrams for pipen.

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pipen-report

Report generation system for pipen

pipen-verbose

Add verbosal information in logs for pipen.

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immunopipe-example

An example of immunopipe

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pipen-annotate

Use docstring to annotate pipen processes

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pipen-cli-init

A pipen CLI plugin to create a pipen project (pipeline)

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pipen-cli-require

Checking the requirements for processes of a pipeline

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pipen-dry

Dry runner for pipen

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pipen-filters

Add a set of useful filters for pipen templates.

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ceQTL

The co-expression Quantitative Trait Loci pipeline

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pipen-board

Visualizing configuration and running of pipen pipelines on the web

pipen-cli-run

A pipen cli plugin to run a process or a pipeline

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pipen-lock

Process lock for pipen to prevent multiple runs at the same time

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pipen-log2file

Save running logs to file for pipen

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pipen-runinfo

Generate running information for jobs in pipen pipelines.

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immunopipe-ThomasW-2020

Reanalysis of the data from Wu, Thomas D., et al. 2020 using immunopipe.

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immunopipe-ZhengY-2020

Reanalysis of the scRNA-seq and scTCR-seq data from Zheng, Y., et al. 2020 using immunopipe.

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pipen-cli-ref

Make reference documentation for processes

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pipen-poplog

Populate logs from jobs to running log of the pipeline

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