carushi

ParasoR

Parallel solution for local RNA secondary structure analysis

reactIDR

Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification

PABLO

Publicly Available Brain image anaLysis tOol kit

cb_lab

Under construction

seqLoGo

SimpleCompiler

write a simple compiler (c like -> x86_64 assembly language) in golang

AllenBrainAnalyses

Old project: to analyze http://mouse.brain-map.org

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

ayotochtli

biojs

A library of JavaScript components to represent biological data

BUMHMM

BUM-HMM is a statistical modelling pipeline for interpreting high-throughput RNA structure probing data.

carushi

Config files for my GitHub profile.

Catactor

Pipeline for meta scATAC-seq analyses

go-gtk

Go binding for GTK

GoMADScan

Go-based Modification associated database scanner

GSEA-InContext

Gene Set Enrichment Analysis in Python

LassoVariants

Python codes for Lasso feature selection

LinearRegression-with-numpy

LinearRegression with numpy

Meta_scATAC_shiny_server

MetaEnrichmentAnalysis

mrna-prot

Repository for the mRNA/protein study (Csardi et al. 2015)

NGS

scripts for NGS

PROBer

PROBer: A general toolkit for analyzing sequencing-based ‘toeprinting’ assays

Reimplementation

resource

RT_end_counter

Docker image which contains samtools, bedtools2, and RT end counter for high-throughput structure analyses

sleuth

Differential analysis of RNA-Seq

template

A template Sphinx repo

workshop

yeast_coexp_analysis