dfsp-spirit

fsbrain

R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

freesurferformats

GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.

NeuroFormats.jl

Handling of structural neuroimaging file formats for Julia.

wal

Quake modding toolkit for R. Can read, export and import Quake bitmap images in WAL and Q1 texture formats, read and export MDL and MD2 models, extract PAK and WAD archives.

freesurfer_parallel_scripts

Shell scripts to run FreeSurfer's recon-all in parallel on multi-core machines.

pkgfilecache

GNU R package that allows package authors to cache data files in user directories.

libfs

A header-only, no-dependency, C++11 library for accessing FreeSurfer neuroimaging file formats.

neuroformats-rs

Handling of structural neuroimaging file formats for Rust.

haze

Fast smoothing of per-vertex data on triangular meshes for R.

abide_preproc_smri_freesurfer6

Data from our own pre-processing of the ABIDE I sMRI dataset (1035 subjects) in FreeSurfer v6.

brainview

Python module to visualize morphometry data on 3D brain meshes. Based on matplotlib and mayavi. Prototype.

cpp_geodesics

Fast computation of geodesic distances and related mesh descriptors on (brain surface) meshes in C++ and OpenMP.

system_config

My system configuration (bash_profile, bashrc, vimrc, ...) including my setup for popular neuroimaging software.

dfsp-spirit.github.io

Repo for my personal website, generated with Jekyll. Ignore.

jneuroformats

Reading and writing structural neuroimaging file formats for Java.

neuro

Go module for reading and writing structural neuroimaging file formats. Supports FreeSurfer MGH, MGZ, and related formats.

pyhaze

Fast smoothing of per-vertex data on triangular meshes for Python.

aspell

dfsp-spirit

May Github profile header, displayed when visiting my profile page.

esi-syncopy-feedstock

A conda-smithy repository for esi-syncopy.

fuji

FAIRsFAIR Research Data Object Assessment Service

jena-site

Website sources for the Apache Jena website

mass-offlineimap

Script to move a number of IMAP mail accounts from an old to a new server over IMAP using offlineimap

nfdigithub

OSSRH-93565

photowebpage

A simple Python script to generate a static HTML gallery page that displays all images in a directory. Intended for my personal use only. Ignore this.

playground

My playground for trying out software, often computational neuroscience packages. Ignore this, you don't want it.

presentation_slides_git_for_scientists

Slides for my presentation: 'Introduction to Git for Scientists'

ptgl-openapi

OpenAPI specification for the API of the Protein Topology Graph Library (PTLG).

syncopy

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data