cell-migration

There are 0 repository under cell-migration topic.

• AlphonsG / EPIC-BBox-Cell-Tracking

  Harness deep learning and bounding boxes to perform object detection, segmentation, tracking and more.

  object-trackingobject-detectioncell-detectioncell-trackingdeep-learningcell-migration
  Language:Python 8

• quantixed / CellMigration

  Analysis of cell migration in Igor Pro

  cell-migrationigorimagejtracking
  Language:IGOR Pro 7

• ocbe-uio / trajpy

  Trajpy - empowering feature engineering for trajectory analysis across domains.

  python-packagediffusiontrajectory-analysiscell-migrationrepeated-measurementstime-series
  Language:Python 6

• cells2numbers / migrationminer

  MigrationmineR is a R package to analyse and profile in vitro cell tracking and migration data. It is belongs to the cytominer-verse used for morphological profiling and allows to create temporal or dynamic profiles.

  cell-migrationcell-tracking
  Language:R 5
• MotiQ

  hansenjn / MotiQ

  A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.

  imagej-pluginsmicrogliamicroglial-morphologycell-migrationimage-analysis-workflowsmorphologymorphology-analysismorphology-metricsmotilitymicroglial-motilitymorphology-reconstructionmotility-analysisfluorescence-microscopy-analysisfluorescence-microscopy-imagingtimelapse-image
  Language:Java 5

• msymeonides / Migrate3D

  A Python package for analyzing XYZ positional data of moving objects over time

  cell-biologycell-migrationmotility-analysispython3
  Language:Python 5
• cellmigstandorg.github.io

  CellMigStandOrg / cellmigstandorg.github.io

  Main CMSO website

  cell-migrationjekyllwebsite
  Language:CSS 2

• CellMigStandOrg / CMSO-datasets

  Metadata for curated CMSO datasets

  cell-migrationdatasetsmetadata-files
  Language:Python 2

• CellMigStandOrg / MIACME

  Repository for the Minimum Information About Cell Migration Experiments

  cell-migrationmiacme-specificationsminimum-reporting-guidelines
  Language:Rich Text Format 2

• sandeep13712 / CellMigration

  Proteolytic and non-proteolytic cell migration

  compucell3dcc3dcell-migrationcellular-potts-modelmodeling
  Language:Python 2

• alonsoJASL / macrosight

  Macrophages tracking using phagosight.

  matlabshape-evolutionmovement-analysiscell-migration
  Language:MATLAB 1

• amatov / SegmentionCellEdge

  cell-segmentationprostate-cancermetastasis-analysisactive-contourpixel-intensity-thresholdingcell-cell-junctionfocal-adhesioncomputer-visionimage-analysis-and-processingquantitative-imagingtotal-internal-reflection-fluorescence-microscopyoncogenic-signaling-pathways-regulationintegrin-adhesion-complexescell-migrationmulti-parametric-analysisbayesian-network-inferencesmall-gtpase-rap1metastasis-promoting-hormone-hgffocal-adhesion-motion-trackingfocal-adhesion-morphology-analysis
  Language:MATLAB 1

• c-litschko / Dicty-Tracking

  Tool for semi-automatic tracking of migrating Dictyostelium cells from phase-contrast time-lapse image series

  cell-trackingdictyosteliummatlabstandalonephase-contrastcell-migrationtime-lapse-imagingvisual-basiccell-biology
  Language:Visual Basic 1

• miguelatienza / onedcellsim

  biophysical-modelingcell-mechanicscell-migrationjuliapython
  Language:Python 1

• ScientistRachel / multiScalePIVanalysis

  PIV-based tools for measuring collective cell migration

  cancerimage-analysiscell-biologycell-migrationcollective-migration
  Language:MATLAB 1

• zaritskylab / SpatiotemproalQuantificationMonolayerCellMigrationPipeline

  A Matlab pipeline for spatiotemporal quantification of monolayer cell migration. The repository includes Matlab source code. This repository is part of the book series "Neubias Bioimage Analysis". The analysis pipeline includes segmentation, velocity measurements, kymographs and multi-dimensional representations and PCA of wound healing assays.

  bioimage-analysiscell-migrationkymographymultidimensional-datapcasegmentationspatio-temporal-analysisvelocity-measurement
  Language:MATLAB 1

• Harkany-Lab / Zupancic_2023

  This repository enables the reproducible analysis of an important developmental neuroscience dataset on hypothalamus neuron differentiation. It performs quality control, clustering, trajectory analysis, and identification of marker genes to characterize the differentiation trajectories of glutamatergic and GABAergic Onecut3+ neuronal subtypes.

  cell-migrationdopamineglutamatetrhthyrotropin-releasing-hormonecytoskeletonsingle-cell-rna-sequencingtranscription-factorsgabaergic-neuronsglutamatergic-neuronshypothalamus-developmentneuritogenesisneuron-maturationneuronal-differentiationonecut3
  Language:R 0

• ingewortel / 2022-Tcell-evolution

  Code and supplements to the manuscript "Interpreting T-cell search 'strategies' in the light of evolution under constraints"

  cellular-automataevolution-simulationsimulationcell-migrationcell-trajectorytcell
  Language:JavaScript 0

• kirch7 / superboids2

  biophysicscell-migrationcell-modelingmolecular-dynamicssimulation
  Language:C++ 0

• borge-holme / celltraxx_download

  Automated tracking of cell migration in phase contrast microscope images

  cell-migrationimagejphase-contrast-imagingtracking
  Language:C