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Plant and Food Research (PlantandFoodResearch)

Plant and Food Research

PlantandFoodResearch

Geek Repo

The New Zealand Institute for Plant and Food Research. Crown Research Institute. Contact Matthew Laurenson or Zane Gilmore for access.

Location:New Zealand

Home Page:https://plantandfood.co.nz/

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Plant and Food Research's repositories

MCHap

Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

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pytomicropy

Python to Micropython converter

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machine-vision-acquisition

A playpen for generic machine vision acquisition workflows

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hidecan

Package to create hidecan plots for GWAS and differential expression results

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ONT_CRISPR-Cas9_enrichment

Public Repository for publication workflows

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pyeagleio

Python library to interact with https://eagle.io/

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APSIM_Docker

Dockerfile and helper files to build Apsim Classic in a Docker container

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eFP-Browser

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pyserialdrivers

A collection of OOB serial drivers for interacting with predominantly environmental sensors

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sandpit

A demonstration repository

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aspire-lite

Aspire Asparagus Android app written by Alastair Hughes

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ckanext-pfr

Configuration and settings associated with PFR's CKAN instance

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20-by-2020

Data analysis for a collaborative project with FAR aiming to improve wheat yields

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AppSecret

R6 Package to Work with PKI and AES-256-CBC

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APSIM.Shared

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ApsimX

ApsimX is the next generation of APSIM

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assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

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docker-ckan

Docker Compose setup for CKAN

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Example-Tetraploid-Potato-VCF-PRJNA414303

Example tetraploid VCF from NCBI BioProject PRJNA414303

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github-automation

Scripts and tools to automate github

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KateLindyMaryamTestRepo

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LoggerPrograms

This repository contains programs written for controlling data loggers

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nextflow-demo

Various examples of using NextFlow in the PFR Environment

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PFR_Spinnaker_Ros_Node

Point Grey (FLIR) Spinnaker based camera driver (Blackfly S etc.)

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QuickTestMassBalanceCalculator

Quick test mass balance calculator. This is a shiny implementation of QTMB as developed in N messure it mange it SFF project.

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radar-twist

Repository for translating arduino interpreted radar speeds into ROS twist with covariance

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SVS

SVS tool development

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TEFingerprint

A Python3 library for transposon fingerprinting

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Tuber_bruising

Scripts for analysis of genetic components of tuber bruising

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Xcm_detection_using_Minion_Sequencing

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