gwct

referee

Reference genome quality scores

grampa

Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis

gwct

Genome-Wide Convergence Tester

core

My personal core functions and scripts for manipulating sequence data, phylogenetic trees, and other things.

bonsai

Algorithm for paring trees based on branch support

GenomeAnnotation

Best practices and workflow for genome annotation

hyphy-interface

Generates commands and scripts to run HyPhy and parse its output

murine-discordance

Data, scripts, and other resources to accompany murine discordance manuscript

spider-wgd

turtle-genomics

Web resources for the comparative turtle genomics project

bioconda-recipes

Conda recipes for the bioconda channel.

congen-bioinformatics

A repo for the ConGen 2022 introductory bioinformatics workshop

fish-genomics

github-intro

A hands-on introduction to git/github

good-protocols

A space for Good lab members to document their pipelines and protocols.

gwct.github.io

My website

healthy-habits

isofilter-gff

Retrieval of longest isoform from gff file

macaque-cnv-figs

Data and scripts for reproducible figures to accompany our macaque CNV paper.

mp-est

MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function

murinae-docs

murinae-seq

Resources and documents relating to the large-scale rodent sequencing projects.

mus-t-haplotype

my-new-repo

Example repo creation

oeb275r-phyloacc-data

pafr

Read, manipulate and visualize 'Pairwise mApping Format' data in R

phast_scripts

PhyloAcc

PhyloAcc a software to detect the changes of conservation of a genomic region

sample-reads

Randomly sample reads from BAM files based on tags and split them

UM-CoV-Seq

Pipelines and protocols for SARS-CoV-2 sequencing at the University of Montana