exposome

There are 0 repository under exposome topic.

• IDSL.IPA

  idslme / IDSL.IPA

  Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidomics, exposomics, and environmental studies.

  metabolomicslipidomicsexposomemass-spectrometryfeature-detectionpeak-detectionsmall-moleculecranruntargeted-metabolomicspeak-picking
  Language:R 14

• eric9n / Kun-peng

  Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all

  kraken2metagenomicssequence-classificationbioinformaticsexposomemicrobiome
  Language:Rust 8
• IDSL.UFA

  idslme / IDSL.UFA

  United Formula Annotation (UFA) for LC-HRMS data

  molecular-formulae-assignmentisotopic-distribution-calculationsmass-spectrometryexposomemetabolomicslipidomicssmall-moleculecran
  Language:R 7

• idslme / IDSL.MXP

  A light weight and fast parser for reading mzML, mzXML and netCDF data files

  gc-ms-datalc-ms-datamass-spectrometrymzmlmzxmlnetcdfexposomelipidomicsmetabolomicsr
  Language:R 5

• barupal / exposome

  The Blood Exposome Database

  exposomemetabolomicstext-miningtoxicology
  Language:R 4

• ErickNavarroD / RAMEN

  Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.

  exposomegenomemethylation-analysismethylation-microarraysmultiomicsr-packagebioinformatics-tooldna-methylation
  Language:R 4

• idslme / CCDB

  Chemical Correlation Database (CCDB)

  exposomemass-spectrometrymetabolomics
  Language:R 3

• lorenzoFabbri / paper-helix-multiOmics

  PhD paper #1

  childhoodendocrine-disruptorexposomegraphical-modelsmulti-omicsnetwork-analysispesticidesphenolspregnancyphthalates
  Language:Rich Text Format 3

• scannotation / Scannotation_software

  Scannotation is an automated and user-friendly suspect screening tool for the rapid pre-annotation of LC-HRMS datasets. This software combines several MS1 chemical predictors: m/z, retention times, isotopic patterns and neutral loss patterns, to score the proximity between features and suspects, thus efficiently prioritizing compounds of interest.

  annotationsuser-friendlysuspect-screeninghrmsretention-timesisotopic-patternssoftwarescoringneutral-lossmetabolitecompound-identificationexposomenon-targeted-analysis
  3

• idslme / IDSL.UFAx

  Exhaustive Formula Annotation from ions to formula

  mass-spectrometrymolecular-formulae-assignmentisotopic-distribution-calculationselemental-compositioncranexposomelipidomicsmetabolomics
  Language:R 1

• mcwdsi / exposd

  The EXPOSD ontology represents surrogate data and markers for envirnmental exposures and health outcomes.

  exposomeexposureontology

• tomszar / PheEWAS_sexdiff

  Phenome-wide sex differences in environmental effects in NHANES

  exposomepheewassex-differences
  Language:Jupyter Notebook