regulatory-network

There are 0 repository under regulatory-network topic.

gitter-lab / SINGE
Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
regulatory-network single-cell-rna-seq granger-causality
Language:MATLAB 11
BioinformaticsFMRP / Bioc2017.TCGAbiolinks.ELMER
Integrative analysis workshop with TCGAbiolinks and ELMER
bioconductor bioc2017 tcgabiolinks tcga gdc dna regulatory-network
6
draeger-lab / SBMLsqueezer
Context-sensitive creation of kinetic equations in biochemical networks
andreas-dr-ger andreas-zell biochemical-networks biological-networks bmc-systems-biology celldesigner computational-biology equation information-extraction kinetic-equations mathematical-modelling metabolic-engineering plug reaction reactions regulatory-network sbml sbo systems-biology
Language:HTML 4
dieterich-lab / dorina
doRiNa - database of posttranscriptional regulatory elements
pybedtools genome python database bioinformatics regulatory-network
Language:Jupyter Notebook 3
epiRomics
Huising-Lab / epiRomics
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
enhancer atac-seq r-package data-visualization chip-seq histone chromatin-accessibiity enhancer-prediction transcription-factors transcription-factor-binding regulatory-network epigenetics epigenomics multi-omics rna-seq ucsc-browser regulome-analysis
Language:HTML 3
zhangjunpeng411 / MSLCRN
MSLCRN: a novel step-wise method for inferring module-specific lncRNA-mRNA causal regulatory network in human cancer
lncrna mrna human-cancer regulatory-network
Language:R 3
HubSpokeLandingZone
adelagar / HubSpokeLandingZone
Hub and Spoke Landing Zone for either Azure Commercial or Azure Government scenarios.
azure azurenetworking datacenter development hybrid-cloud infrastructure infrastructure-as-code landingzone production regulatory-network cloudarchitect
1
gitter-lab / SINGE-supplemental
Supplemental scripts and analyses for the SINGE manuscript
single-cell-rna-seq granger-causality regulatory-network
Language:MATLAB 1
mushthofa / ASPG
ASP-based attractor computation
gene regulatory-network attractors boolean-network answer-set-programming
Language:Python 1
rilletlee / CMTCN
CMTCN: A web tool for investigating cancer-specific microRNA and transcription factor co-regulatory networks
regulatory-network mirna transcription-factors shiny-apps website
Language:R 1
tanlabcode / arvin
A package that ranks the SNPs using genomic, epigenomic and network based features.
human-genetics noncoding-mutations regulatory-network
Language:Perl 1
jarnokoetsier / HDAC6Network
A novel insight into neurological disorders through HDAC6 protein-protein interactions
alzheimers-disease central-nervous-system hdac6 parkinsons-disease protein-protein-interaction regulatory-network
Language:R 0
JosephRyanPeterson / PlogP_TRN
Reconstruct a Transcriptional Regulatory Network using the principle of Maximum Entropy.
transcription-factors gene-expression maximum-entropy transcriptional-regulatory-network regulatory-network systems-biology
Language:Julia 0
jseidel5 / Python-Probabilistic-Regulation-of-Metabolism
Python Implementation of PROM
metabolic-models flux-balance-analysis regulatory-network
Language:MATLAB 0
higorsmonteiro / networkfibers
Identification and classification of network fibers for general information networks. (C/Python)
complex-systems graph-fibration regulatory-network
Language:Python
tmoerman / hundur
A minimal Python library for gene regulatory network inference.
genomics inference machine-learning gradient-boosting regulatory-network scalable python dask