nanostring

There are 1 repository under nanostring topic.

nf-core / nanostring
An analysis pipeline for Nanostring nCounter expression data.
nf-core nextflow workflow pipeline nanostring nanostringnorm
Language:Nextflow 14
NACHO
mcanouil / NACHO
NAnostring quality Control dasHbOard.
nanostring shiny quality-control normalisation r-package r-stats rstats mirna mrna
Language:R 8
calebclass / Shiny-NanoTube
A web app for easier NanoString gene expression analysis
differential-expression nanostring shiny
Language:R 2
KevinMenden / nanoR
R package for analysis of NanoString data
nanostring analysis
Language:R 2
leosfan / fastq2dcc
Install the GeoMxNGSPipeline_Linux_2.0.0.16 tool from Nanostring/illumina to docker container, and convert it to Singularity.
digital-pathology dsp geomx nanostring singularity-container
2
antosalerno / NeuroblastomaTEPA_code
Analysing single-cell and DSP data to test the effect of copper chelation with TEPA in Neuroblastoma mice
bioinformatics cancer copper copper-chelation neuroblastoma single-cell single-cell-rna-seq spatial spatial-analysis spatial-data-analysis spatial-transcriptomics geomx geomx-dsp nanostring rhapsody
Language:R 0
PesenackerLab / Attrill-2024-Treg-JIA-biomarker-
This repository contains the two R scripts used in the paper titled Treg fitness as a biomarker for disease activity in Juvenile Idiopathic Arthritis by M. H. Attrill et al. 2025.
biomarker-discovery elastic-net nanostring
Language:R
RRafiee / GeneExpressionClassification
NanoString classifier based on NGS training set
classification classifier gene-expression gene-expression-profiles nanostring next-generation-sequencing ngs normalization probability support-vector-machines
Language:R
RRafiee / NIMBLE
NanostrIng MB cLassifiEr
nanostring classification classifier subgroups support-vector-machines svm-model gene training expression gene-expression-signatures medulloblastoma rna-seq next-generation-sequencing shiny shiny-applications normalization ncounter
Language:R