mirna-mrna-interaction

There are 1 repository under mirna-mrna-interaction topic.

• CRAFT

  annadalmolin / CRAFT

  CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different circRNAs. CRAFT is a useful tool to help the user explore the potential regulatory networks involving the circRNAs of interest and generate hypotheses about the cooperation of circRNAs into the regulation of biological processes.

  bioinformaticscircrna-predictionmirna-mrna-interactionopen-reading-framerna-binding-proteins
  Language:RMarkdown 8

• TBradley27 / FilTar

  Using RNA-Seq data to improve microRNA target prediction accuracy in animals

  mirna-targetsmirnamirna-mrna-interaction
  Language:Python 8

• omics-datascience / modulector

  An open platform which provides information about miRNAs and genes from different popular databases

  multiomixgene-expressionmirna-mrna-interactionmrnamirnamethylationpubmed
  Language:Python 6

• FINitenet / TRMRNAseqTools

  The TRMRNASeqTools is a SHELL and Python based pipeline designed for automatic general analysis for TRM sRNA sequencing data in supported plants.

  bioinformaticsmirna-mrna-interactionsrna-seqrna-seqrnaseq-analysis
  Language:Shell 1

• prashnts / miriam-explore

  Source code for miRiam web server and visualisation

  bioinformaticsgene-regulationgenesmirnamirna-mrna-interaction
  Language:HTML 1

• aaydenn / rewiring

  Code for the master thesis "Exploring MicroRNA Interaction Networks to Explain the Relationship Between Caloric Restriction and Breast Cancer in Mice"

  bioinformatics-analysismirna-mrna-interactionnetwork-analysisr
  Language:R 0

• compcore-irzbz / bindseek

  miRNA target identification in non-model species

  3utrbinding-sitesmirna-mrna-interaction
  Language:Python 0

• Ding-RNA-Lab / Sfold

  SFold RNA tools

  mirna-mrna-interactionmrnamirna-bindingmrna-structure
  Language:Perl 0
• MIRit

  jacopo-ronchi / MIRit

  An open-source R package to comprehensively explore the role of impaired miRNA regulatory networks in complex biological conditions.

  mirnamirna-mrna-interactionmirna-seqmirnaseq-analysis
  Language:R 0

• TBradley27 / FilTarDB

  Web application for accessing data generated by FilTar

  mirna-mrna-interactionmirna-targetsrna-seqexpression
  Language:JavaScript 0

• chasesmith15 / Mitonuclear-SD

  Investigate the role of mtDNA in the sex determination of freshwater mussels with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.

  genomicsmirna-mrna-interactionrna-seqrna-seq-analysiswhole-genome-sequencing
  Language:R

• metamaden / PrImiR

  Database of pairwise consensuses for miR-mRNA target interactions

  mirnatarget-predictionmirna-mrna-interactionmirna-targetsmirna-databasecomputational-biologysystems-biologyepitranscriptomicstranscriptomicspost-transcriptional-regulationtarget-scanmirandamirdbmirtarbasemirmap
  Language:R