nathakits / streamlit-sars-cov2

SARS-CoV-2 analysis using BioPython

SARS-CoV-2 analysis with BioPython and Streamlit

Introduction

Analyze SARS-CoV-2 genome from Thailand and China.

• Nucleotide frequency
• Transcription (DNA -> mRNA)
• Translation (mRNA -> Amino acids)
• Compare DNA with pairwise2

Build locally

Instill Anaconda if you haven't already.

Set up and activate development environment:

conda env update --file environment.yml --name pyviz
conda activate pyviz

Run web app

streamlit run covid19.py

Test Streamlit

streamlit hello