image-analysis-workflows

There are 1 repository under image-analysis-workflows topic.

Cardiac-MR-Group-Lund / segment-open
Segment Source Distribution
medical-image-processing medical medical-imaging magnetic-resonance-imaging cardiac cardiac-segmentation cardiac-dynamics computed-tomography computedtomography segmentation plugin-system plugin plugins image-processing image-analysis image-analysis-and-processing image-analysis-workflows matlab matlab-gui matlab-interface
Language:MATLAB 69
ciccalab / SIMPLI
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
bioimage-analysis bioimage-informatics bioimage-tools bioimaging cell-segmentation gating histological-images histology image-analysis-workflows imaging-mass-cytometry imc immunofluorescence life-sciences-image mcd ome-tiff single-cell-analysis tissue-analysis tissue-classification
Language:R 33
imagej_macros_and_scripts
MontpellierRessourcesImagerie / imagej_macros_and_scripts
ImageJ macros and scripts written at the imaging facility MRI
imagej-macros imagej fiji-macro fiji bioimage-analysis image-analysis-workflows jython toolsets imagej-macro imagej-plugins imagej-macro-scripts
Language:ImageJ Macro 27
tlnagy / OMETIFF.jl
I/O operations for OME-TIFF files in Julia
image-processing ome-tiff julia-language julia ome-files micromanager image-analysis image-analysis-workflows
Language:Julia 24
crud89 / Texturize
A unified framework for example-based texture synthesis, developed alongside my master's thesis.
texture-synthesis texture-analysis texture-generation image-processing procedural-textures computer-vision synthetic-images computer-graphics textures image-analysis image-analysis-workflows image-analysis-and-processing texture-mapping
Language:C++ 17
waliens / sldc
An open-source Python framework created for accelerating development of large image analysis workflows
image-analysis-workflows
Language:Python 11
MotiQ
hansenjn / MotiQ
A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.
imagej-plugins microglia microglial-morphology cell-migration image-analysis-workflows morphology morphology-analysis morphology-metrics motility microglial-motility morphology-reconstruction motility-analysis fluorescence-microscopy-analysis fluorescence-microscopy-imaging timelapse-image
Language:Java 5
PathologyDataScience / MatDigitalPathology
Matlab functions to support analysis of digital pathology images.
image-analysis image-analysis-workflows image-processing matlab digital-pathology cancer microscopy
Language:MATLAB 5
Quantitative-Big-Imaging / Quantitative-Big-Imaging-2017
The material for the Quantitative Big Imaging Course at ETHZ for Spring Semester 2017
big-data educational image-analysis image-analysis-workflows image-processing knime lecture-slides
Language:HTML 4
AriChow / image_analysis_toolbox
Toolbox for image analysis pipeline (image pre-processing, feature extraction, feature preprocessing, dimensionality reduction, classification, clustering and regression). Powered by sklearn and other python libraries.
image computer-vision machine-learning image-analysis-workflows image-analysis-toolbox
Language:Python 2
ggirelli / pygpseq
Python3 package to analyse GPSeq images and manage TIFF files.
image image-analysis image-processing image-analysis-workflows 3d tiff tiff-format tiff-files nuclei cell gpseq fish-signals
Language:Python 2
jonasoh / AuTToFlux
Pipeline for high-throughput analysis of RFP/GFP ratios in vacuoles
autophagy biology image-analysis-workflows imagej r science
Language:R 1
ogemarques / python-matlab
Example of how to integrate MATLAB apps into a Python deep learning workflow for computer vision and image analysis tasks.
matlab python computer-vision deep-learning image-processing image-analysis image-analysis-workflows segmentation image-segmentation image-annotation image-annotation-tool image-segmentation-pipeline
0
kmader / conduit_analysis
binder-ready image-processing image-analysis image-analysis-and-processing image-analysis-workflows
Language:Jupyter Notebook
rjrahul24 / cnn-logistic-image-analysis
We build upon Logistic Regression concepts and create a Deep Learning Convolution Neural Network. This repository explains how Logistic Regression is really the root of building Multilayer Perceptron models for Machine Learning and Deep Learning.
logistic-regression deep-learning pytorch pytorch-tutorial image-processing image-analysis-workflows
Language:Jupyter Notebook