microglia

There are 1 repository under microglia topic.

• ALS_model

  Hjertesvikt / ALS_model

  Amyotrophic Lateral Sclerosis (ALS) is a fatal neurodegenerative disease of the adult, characterized by degeneration of motor neurons in the spinal cord, brain stem and motor cortex. There is no bio-informatic model of ALS.

  charcotalsneurosciencesbmlneurodegenerativeneuronsmotoneuronastrocyteastrogliamicroglia
  6
• MotiQ

  hansenjn / MotiQ

  A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.

  imagej-pluginsmicrogliamicroglial-morphologycell-migrationimage-analysis-workflowsmorphologymorphology-analysismorphology-metricsmotilitymicroglial-motilitymorphology-reconstructionmotility-analysisfluorescence-microscopy-analysisfluorescence-microscopy-imagingtimelapse-image
  Language:Java 5

• SandraSSB / MACROglia_cell-morphology-analysis

  ImageJ macro for morphological analysis

  astrocytesfractalimagej-macromicrogliamorphology-analysisneuronssemi-automatic
  Language:ImageJ Macro 1

• ayushnoori / apoe-glia

  Effect of APOE alleles on the glial transcriptome in normal aging and Alzheimer’s disease.

  apoemicrogliaastrocytesagingalzheimers-disease
  Language:CSS 0

• LucaGiudice / Microglia-AD-PIEZO1

  Triple single cell analysis of microglia cell types for studying PIEZO1 alterations in Alzheimer patients

  single-cellclusteringbioinformaticsmicroglia
  Language:R 0

• mcrewcow / Pan_et_al_DFChen_IGFPL1_paper

  IGFBPL1 Retinal Microglia Project | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School

  bioinformaticsforceatlas2glaucomamicrogliaophtalmologyrna-seqrna-seq-analysisrna-velocityscanpyscvelosingle-celltranscriptomicsvelocyto
  Language:Jupyter Notebook 0

• mcrewcow / Sun_Ye_microglia_macrophages_paper

  Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital

  cellchatforceatlas2macrophagemicrogliapythonrrnarna-velocityscanpyscveloseuratsingle-celltranscriptomicsvelocitygobpoirsocs3spp1
  Language:Jupyter Notebook 0

• nkorobkov / microglia-or

  Scripts to segment microglia images and generate reports

  object-detectionmicrogliaopencvpython3jupyter-notebookobject-recognitionconvex-hull
  Language:Jupyter Notebook 0

• poshtkohi / computational-neuroscience

  Mathematical modelling of microglial cells for the neuroscience community

  computational-biologycomputational-neurosciencedifferential-equationselectrophysiologygliamathematical-modellingmicroglianeuronneurosciencenumerical-analysisodeoptimisationphysiologycurve-fittingmatlabparameter-estimationmatlab-codereaction-networksp2x-receptorp2y-receptor
  Language:MATLAB 0

• RidwaanJoghee / Amyloid-Beta-Concentric-Circle-Spatial-Analysis

  In Alzheimer’s disease, abnormal levels of the Aβ protein aggregate together to form Aβ plaques. The response to plaques by microglial cells is characterised by changes in gene expression and an increase in cell density surrounding plaques. This set of semi-automated macros calculates both microglial density and changes in protein expression intensity within concentric circles drawn every 10μm from plaques. The macros used in this analysis were scaled for images taken on a 20X objective. The macros can be edited appropriately.

  neurosciencealzheimersalzheimers-diseasemicrogliaastrocytesspatial-analysis
  0

• SoriaFN / Microglia_tools

  ImageJ macros to analyse microglial cells in live or fixed tissue (Work-in-progress)

  imagej-macromicrogliafluorescence-imagestime-lapse-imaging
  Language:ImageJ Macro 0