imaging-mass-cytometry

There are 0 repository under imaging-mass-cytometry topic.

• camlab-bioml / astir

  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨

  machine-learningimaging-mass-cytometrymultiplexed-imaging
  Language:Python 47

• ciccalab / SIMPLI

  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

  cell-segmentationsingle-cell-analysisimaging-mass-cytometryimmunofluorescencehistological-imagesgatingtissue-analysistissue-classificationhistologybioimage-analysisbioimagingbioimage-toolsbioimage-informaticsmcdimclife-sciences-imageome-tiffimage-analysis-workflows
  Language:R 33

• BodenmillerGroup / cytomapper

  R package for visualization of highly multiplexed imaging data

  single-cellimaging-mass-cytometrybioimagingspatial-analysis
  Language:R 32

• Mr-Milk / SpatialTis

  Spatial analysis toolkit for single cell multiplexed tissue data

  single-cellspaital-analysistissuespatial-distributionheterogeneitynetworkhotspotimaging-mass-cytometrymultiplexed-ion-beam-imagingcell-cell-interactionspatial-analysisspatial-omics
  Language:Python 29

• AlanRace / biquinho

  Visualisation software for imaging mass cytometry data

  bioimagingimaging-mass-cytometryvisualization
  Language:Rust 6

• AlanRace / imc-rs

  Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.

  imaging-mass-cytometryrustbioimagingmultiplexed-imaging
  Language:Rust 1