Beast code in Giters

Jonas Ohlsson's repositories

spiro

SPIRO is a Smart Plate Imaging Robot

Language:PythonBSD-2-Clause10 2 35

gracken

Create phylogenetic trees from Bracken/Kraken2 reports

Language:PythonMIT300

spiro-assay-customizer

SPIRO Assay Customizer

Language:PythonBSD-2-Clause2 1 1

AuTToFlux

Pipeline for high-throughput analysis of RFP/GFP ratios in vacuoles

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AMB_ampts2_script

Script for processing AMPTS II biogas data

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ambvis

A visualization platform for (anaerobic) microorganisms

Language:PythonBSD-2-Clause010

biogas

Tools for biogas research in R: process biogas data and predict biogas production

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car_inspection_stats

Shiny app for exploring car inspection statistics

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DNA-to-BINARY

Bash program for DNA sequence to binary format translation

Language:ShellGPL-3.0010

etalumacontrol

Python package for interacting with Etaluma microscopes

Language:PythonBSD-2-Clause01 1

trash_sorting_game

Educational biogas / trash sorting game for SciFest

Language:PythonBSD-2-Clause010

etalumaliveview

Demo application for etalumacontrol

Language:PythonBSD-2-Clause010

gapseq

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

Language:RGPL-3.0000

gasmix

Language:PythonMIT000

hplc_formatter

Simple Shiny app to reformat reports from Agilent Chemstation

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REDigest

REDigest: a Python GUI for In-Silico Restriction Digestion Analysis for Gene or Complete Genome Sequences

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spiro-ai-tools

Tools for extracting and processing SPIRO data using AI -- WIP!

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thermosampler

Thermodynamic analysis of metabolism

Language:PythonMIT000

tutorials

:notebook_with_decorative_cover: Various bioinformatics tutorials

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userscripts

A collection of my userscripts

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web

GitHub pages repo

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