gencorefacility

gencorefacility's repositories

Variant Calling Pipeline Using GATK4 and Nextflow

Language:Nextflow52 2 1

Modify existing reference fasta and gff3/gtf files to include a new sequence

Language:Python29 2 7

Gene Set Enrichment Analysis and Over Representation Analysis analysis using R

HPC based pipelines for variant calling using GATK

Language:Shell17 3 1

Variant Analysis Pipeline for COVID19

Language:Nextflow400

Repository of NextFlow Workflows

Language:Nextflow400

Collection of BADAS related resources

Language:Jupyter Notebook1 30

Minor Allele Detection Pipeline for SARS-CoV2

Language:Python1 30

Language:Python000

A JBrowse plugin for plotting allele fraction data

Language:JavaScript000

Flask WebUI for reform

Language:Python020

More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original

Language:C++MIT010

000

Genomic Examination and Nucleotide Evaluation For Laboratory Operations Workflow

Language:Python000

Language:Nextflow000