Christian von Mering's lab's repositories
FlashWeave.jl
Inference of microbial interaction networks from large-scale heterogeneous abundance data
og_consistency_pipeline
Consistency pipeline for hierarchies of orthologous groups (OGs) based on subsampling and tree reconciliation
cellbase-docker
dockerised opencb/cellbase
stringdb-psicquic
The official http://string-db.org PSICQUIC implementation.
annotation_system_assessment
Snakemake pipeline to benchmark 11 functional pathway annotation systems
gene-assassin-app-score
geneassassin.com application scoring
gene_assassin_api
geneassassin.org API (guides, proteins, primers, ...)
MAPseq-HMP_reanalysis
This repository contains code used to reanalyse Human Microbiome Project data to benchmark MAPseq.
paxdb-orthology
DEPRECATED use lib&storage&api repos
paxdb-orthology-api
orthology api frontend
paxdb-orthology-lib
pax-db.org orthology API npm module
MAPseq
highthroughput rRNA sequence classification and OTU mapping for metagenomic samples
paxdb-search
search microservice
stringdb-jdbc
Java utilities for http://string-db.org PostgreSQL data