Christian von Mering's lab (meringlab)

Christian von Mering's lab

meringlab

Geek Repo

Location:Zürich

Home Page:http://meringlab.org

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Christian von Mering's lab's repositories

FlashWeave.jl

Inference of microbial interaction networks from large-scale heterogeneous abundance data

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Bio334

Bio334 Public student repository

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og_consistency_pipeline

Consistency pipeline for hierarchies of orthologous groups (OGs) based on subsampling and tree reconciliation

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cellbase-docker

dockerised opencb/cellbase

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stringdb-psicquic

The official http://string-db.org PSICQUIC implementation.

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annotation_system_assessment

Snakemake pipeline to benchmark 11 functional pathway annotation systems

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gene-assassin-app-score

geneassassin.com application scoring

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MAPseq-HMP_reanalysis

This repository contains code used to reanalyse Human Microbiome Project data to benchmark MAPseq.

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mltreemap

accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

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paxdb-api

abundance microservice

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paxdb-orthology

DEPRECATED use lib&storage&api repos

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paxdb-orthology-api

orthology api frontend

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paxdb-orthology-lib

pax-db.org orthology API npm module

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gene_assassin_api

geneassassin.org API (guides, proteins, primers, ...)

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paxdb-search

search microservice

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stringdb-jdbc

Java utilities for http://string-db.org PostgreSQL data

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