variant-calls

There are 1 repository under variant-calls topic.

ga4gh / benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
ga4gh variant-calls benchmarking genomics genome-sequencing standardization reference-materials
Language:HTML 182
grenepipe
moiexpositoalonsolab / grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
variant-calls snakemake snakemake-pipeline evolve-and-resequence population-genetics ancient-dna variant-calling pool-sequencing
Language:Python 79
Moduland / csv2vcf
🔧 Simple script in python to convert CSV files to VCF
vcf csv converter python python3 comma-separated-values variant-calls tools script moduland contacts phone-number email-template phonebook phonebooks contact contacts-app contacts-manager contacts-book vcard
Language:Python 70
lynnlangit / TeamTeri
Bioinformatics on GCP, AWS or Azure
cancer-genomics variants genome-analysis genome-sequencing gcp aws variant-calls bioinformatics genomics-analysis gatk azure
Language:Shell 52
dancooke / starfish
Intersect multiple VCF files with haplotype awareness
vcf-files haplotypes intersection compare-files variant-calls
Language:Python 22
umccr / umccrise
:snake: DRAGEN Tumor/Normal workflow post-processing
pipeline bcbio reporting cancer-genomics variant-calls bcbio-nextgen cancer-report umccrise pcgr
Language:Python 19
CoreArray / PySeqArray
PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
gds-format wgs python seqarray variant-calls
Language:C++ 13
Yeaseen / GenericListCPP
An implementation of a generic ArrayList and a generic LinkedList in cpp which can store multiple data type variables.
arraylist arraylistassignments cpp17 data-structure data-structure-cpp data-structures-algorithms multiple-data-type variant variant-calls
Language:C++ 6
vinodscaria / COVID19variants
COVID-19 Variants Repository
coronavirus covid-19 genetics genomics ncov ncov-2019 variant-annotation variant-calls variants
2
mgalardini / reads2snps
From second generation sequencing reads to variant calls
variant-calls call-variants bioinformatics pipeline reproducible-science genomics
Language:Makefile 1