Andrew Yates's repositories
refget-server-python
An implementation of the Refget v2.0.0 standard using Python
rust-gc-count
A tool for generating wiggle files of GC from DNA written in Rust.
generic-emailer
A small perl script capable of emailing lots of people
py_generic_emailer
A batch mailer written in Python
refget-server-perl
Perl implementation of the GA4GH refget protocol
api-compliance-framework
Repository containing my project for Global Alliance for Genomics and Health as part of GSoC 2019
basic-htsget
Implementation of htsget using Perl and samtools to do the heavy lifting
cellshim
A shim. You know. Shimmy?
dna_book_formatter
Code for formatting DNA from FASTA and BED files
ena-refget-processor
Collection of scripts and libraries used to build a mirror of ENA in object stores
ensembl-webcode
The code to run an Ensembl website
ensembl-website-help-and-docs
documentation for the new Ensembl site
ga4gh-schemablocks.github.io
Website of the GA4GH SchemaBlocks Project
ga4gh-service-info
GA4GH service-info specification.
gsoc2018-ref-retrieval-api
Repository for the Google Summer of Code for the Reference Retrieval API
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
large-scale-genomics-wiki
Homepage for the Large Scale Genomics Work Stream
public-plugins
Plugins for an Ensembl website
refget-application-note
Code associated with the refget application note
refget-compliance
Compliance reports for GA4GH refget implementations
seqcol-spec
Website for DRAFT specification docs for GA4GH Sequence Collections.
Test-Mock-Redis
A mock version of the Redis.pm redis client
test-publishing
Figuring out how to do website publishing from a github action using a commit
w3id.org
Website source code for w3id.org
webdocker-perllibs
Ensembl web docker image build file
withings-sync
Synchronisation of Withings weight