Quin Lamothe 's repositories
3D-Predictive-Cellular-Automata-
Computational Mathematics Sr. Seminar project. Cellular automaton to predict tumor growth. Comparable to a 3-d Conway's Game of Life.
ssDNA-Aptamer-Prediction-
BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.
Alepidoptera7
README
assembly_scaffold_BLAST
Algorithm to parse, assemble and align genomic sequences by use machine learning techniques. The resulting sequences are used to form NCBI-BLAST respects and return sequence homologs.
cell_image_cnn
CNN for classifying cell types by image.
fragmentation_digester
Fragmentation API
global_alignment_prediction
Machine learning methods for global alignment prediction by use of fourmer frequiencies and path traversal techniques.
k-means-to-BLAST-
Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.
MissingMotif
Determines the most probable sequences missing from a greater set of genomic reads.
mtReptile-
Files pertaining to the processing of NGS data in .fasta.gz format for the purposes of identifying the genomic sequences which belong to either of the tuataras dual mitochondrial genomes.
Proxy-Cleave-Backend-With-GUI
pCleave backend
spring_tension_classifiers
Classification architectures for representing scRNA data through spring tension modeling.
ihh.github.io
Holmes lab website
tuatara_nanopore
Scripts written to operate on tuatara nanopore data for Profile Genomics.