diffusion-maps

There are 3 repositories under diffusion-maps topic.

dpeerlab / Palantir
Single cell trajectory detection
scrna-seq scrna-seq-analysis manifold-learning dimensionality-reduction diffusion-maps markov-chain differentiation single-cell-genomics trajectory-generation cell-fate-transitions
Language:Jupyter Notebook 194
dimkastan / PyTorch-Spectral-clustering
[Under development]- Implementation of various methods for dimensionality reduction and spectral clustering implemented with Pytorch
diffusion-distance diffusion-maps dimensionality-reduction fiedler-vector graph-cut laplacian-maps pytorch pytorch-demo pytorch-numpy pytorch-tutorial sorting-distance-matrix
Language:Python 158
rezakj / iCellR
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).
singel-cell-sequencing clustering-algorithm clustering normalization umap pseudotime scrna-seq scvdj-seq cite-seq 3d intractive-graph 10xgenomics dropout batch-normalization imputation diffusion-maps cell-type-classification icellr
Language:R 116
wildart / ManifoldLearning.jl
A Julia package for manifold learning and nonlinear dimensionality reduction
diffusion-maps dimensionality-reduction isomap julia lle manifold-learning
Language:Julia 90
theislab / destiny
R package for single cell and other data analysis using diffusion maps
r dimensionality-reduction diffusion-maps
Language:R 67
jmbr / diffusion-maps
Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps
diffusion-maps machine-learning module python3
Language:Python 39
alan-turing-institute / ThermodynamicAnalyticsToolkit
Sampling-based approach to analyse neural networks using TensorFlow
sampling neural-networks statistical-analysis diffusion-maps langevin-dynamics hamiltonian-dynamics thermodynamics
Language:Python 21
PyDesigner
muscbridge / PyDesigner
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
dmri dmriprep diffusion-mri diffusion-maps dwi kurtosis diffusion-preprocessing tractography
Language:Python 19
gmishne / DiffusionNet
Diffusion Net TensorFlow implementation
anomaly-detection autoencoder diffusion-maps manifold-learning outlier-detection tensorflow
Language:Jupyter Notebook 11
peterparity / conservation-laws-manifold-learning
Discovering Conservation Laws using Optimal Transport and Manifold Learning
conservation-laws physics chaos diffusion-maps integrable-systems jax laplacian-eigenmaps machine-learning manifold-learning optimal-transport wasserstein-distance
Language:Jupyter Notebook 11
gmishne / diffusion_maps
Matlab implementation of Diffusion Maps
diffusion-maps matlab manifold-learning
Language:MATLAB 9
gmishne / pyquest
pyquest: diffusion analysis of transposable arrays
bi-clustering clustering diffusion-maps hierarchical-clustering manifold-learning tensor-decomposition
Language:Jupyter Notebook 6
abt8601 / diffusion-maps
A library for diffusion maps (Numerical software development project)
diffusion-maps dimensionality-reduction machine-learning
Language:C++ 4
CompleteBlenderCreator / 07.Game.Asset.Pack-Original
(GA_CBC) http://gdev.tv/cbcgithub
blender blender-3d 3d 3d-printing 3d-models 3d-modelling game-assets game-dev game-development uv-mapping displacement-map blend-files diffusion-maps datablock
3
ManuSetty / Palantir
Single cell trajectory detection
scrna-seq manifold-learning machine-learning dimensionality-reduction diffusion-maps single-cell-rna-seq single-cell-genomics single-cell-analysis trajectory-generation manifold-learing entropy differentiation cell-fate-transitions
Language:Jupyter Notebook 3
sampolk / DiffusionLearning
This toolbox allows the implementation of the following diffusion-based clustering algorithms on synthetic and real datasets.
clustering diffusion-maps spectral-clustering dimensionality-reduction graph-algorithms hyperspectral-image-classification hyperspectral-imaging hyperspectral-images hyperspectral-image-analysis
Language:MATLAB 1
YW81 / diffusion_maps
Matlab implementation of Diffusion Maps
diffusion-maps
Language:MATLAB 1
michellefli / cell-diff-reu-2018
dimensionality-reduction principal-component-analysis diffusion-maps cell-differentiation tsne
Language:R 0
rxlacroix / cisteRcians
Diffusion map of cistercian abbeys
dataviz diffusion-maps historical-maps history religion
Language:R 0
bogdantoader / ManifoldLearningInPlatosCave
Numerical experiments showing artifacts resulting from dimensionality reduction.
diffusion-maps dimensionality-reduction manifold-learning
Language:Jupyter Notebook
gmishne / InformedGeometry-CoupledPendulum
bi-clustering clustering diffusion-maps hierarchical-clustering manifold-learning matlab tensor-decomposition tree-algorithms
Language:Matlab
inespancorbo / Statistical-Computing
Mainly Non-Theory (Coding) Homework; Mainly Python
applications bayesian-networks brownian-motion diffusion-maps expectation-maximization-algorithm markov-chain queueing-models sampling-methods stochastic-processes
Language:Jupyter Notebook
sivadasetty / dMap_JAX
Diffusions maps using JAX
diffusion-maps jax molecular-simulations nonlinear-manifold
Language:Python