NathanSkene

EWCE

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

One2One

This package is used to get 1:1 orthologs based on MGI homology data from http://www.informatics.jax.org/homology.shtml

DataDive_scRNAseq_mapping

Imperial Medical Data Dive 2019: code for preparing multiple brain single cell RNA-seq for mapping against each other

MungeSumstats

Generic function for converting GWAS summary statistics to standardised LDSC/MAGMA input format

DendriticEnrichmentPackage

Quality metric for single cell/nuclei datasets. Tests for differences in specificity of neuronal transcripts. Better datasets have more specific neuronal expression.

MicroglialDepletion

NathanSkeneNetlift.github.io

ALS_Human_EWCE

ALS_Mouse_EWCE

Amazon-Fresh-Whole-Foods-delivery-slot-finder

A tool that finds available delivery slots for Amazon's Whole Foods delivery and Amazon Fresh services

Cite_all_my_papers

CTD.human.midbrain.embryonic

Package of single cell RNA-seq data from human midbrain embryonic

datadrivencv

R package for building customizable CVs from spreadsheets

dockstore-tool-bamstats

A repo for the BAMStats command, used as the tutorial for Dockstore

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

InSituRNAseq_ProbeSelection

liger

R package for integrating and analyzing multiple single-cell datasets

my-first-binder

NathanSkene.github.io

Git Pages Website for Nathan Skene

PD.EWCE

ProMMT

Rgtsvm

The R package for SVM with GPU architecture based on the GTSVM software

sdbdbf

SNPLOCDATA

SynaptomeMapping-Ageing

Bayesian analysis of synaptome mapping data, sharing information across regions

SynaptomeMapping-Knockouts

Bayesian analysis of synaptome mapping data, sharing information across regions

TFEA.ChIP

TFEA.ChIP is an R package in developement. Its purpose is to analyze transcription factor enrichment in a set of differentially expressed genes.

thundersvm

ThunderSVM: A Fast SVM Library on GPUs and CPUs

Uniprot2mgi

Map Uniprot IDs to MGI symbols

wowchemy-hugo-modules

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