Giters
Helmchen Lab (HelmchenLabSoftware)

Helmchen Lab

HelmchenLabSoftware

Organization data from Github https://github.com/HelmchenLabSoftware

Lab of Fritjof Helmchen at the Brain Research Institute at the University of Zurich

Location:Zurich, Switzerland

Home Page:http://www.hifo.uzh.ch/en/research/helmchen.html

GitHub:@HelmchenLabSoftware

Twitter:@FritjofHelmchen

Helmchen Lab's repositories

Cascade

Calibrated inference of spiking from calcium ΔF/F data using deep networks

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:156Issues:8Issues:44

Centripetal_propagation_astrocytes

Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions

Language:MATLABLicense:GPL-3.0Stargazers:10Issues:8Issues:2

CaImAn_DendriteAnalysis

Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.

Language:Jupyter NotebookStargazers:6Issues:5Issues:1

OCIA

Calcium Imaging Analysis pipeline with a flexible framework

Language:MATLABLicense:GPL-3.0Stargazers:3Issues:4Issues:0

td_dendrites

Code to simulate the computational model for the manuscript 'Error representations in apical dendrites of neocortical layer 5 neurons during learning'

Language:PythonLicense:GPL-3.0Stargazers:2Issues:6Issues:0

CaImAn_LocomotionAnalysis

Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.

Language:Jupyter NotebookStargazers:1Issues:5Issues:0

manual-multisession-alignment

A tool for manually track neurons across days

Language:MATLABStargazers:1Issues:0Issues:0

blink-detector-ipy3

A pipeline designed to process mouse blink videos, extract blink events and collect blinking statistics

Language:Jupyter NotebookStargazers:0Issues:3Issues:0

CaImAn_legacy

Language:Jupyter NotebookLicense:GPL-2.0Stargazers:0Issues:6Issues:0

contrast-marker-video-tracker

Language:MATLABStargazers:0Issues:3Issues:22

dlc-scripts

This library contains scripts for DeepLabCut used for joint and whisker tracking, as well as some auxiliary video processing scripts

Language:Jupyter NotebookStargazers:0Issues:5Issues:0

HHNE

Happy Hifo NWB Editor

Language:PythonLicense:GPL-3.0Stargazers:0Issues:4Issues:0

mesostat-dev

A library for exploratory analysis of multivariate mesoscopic neuronal signals

Language:PythonLicense:MITStargazers:0Issues:2Issues:0

wilhelm-sych-tmaze-analysis

Language:MATLABStargazers:0Issues:0Issues:0

multiarea_learning_manuscript

Multiarea learning manuscript analysis code

Language:MATLABStargazers:0Issues:0Issues:0