Helmchen Lab

Helmchen Lab's repositories

Calibrated inference of spiking from calcium ΔF/F data using deep networks

Language:Jupyter NotebookGPL-3.0100 10 36

Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.

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Custom code to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions

Language:MATLABGPL-3.02 90

Calcium Imaging Analysis pipeline with a flexible framework

Language:MATLABGPL-3.02 50

Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.

Language:Jupyter Notebook1 60

A tool for manually track neurons across days

Language:MATLAB100

A pipeline designed to process mouse blink videos, extract blink events and collect blinking statistics

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Language:Jupyter NotebookGPL-2.0060

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This library contains scripts for DeepLabCut used for joint and whisker tracking, as well as some auxiliary video processing scripts

Language:Jupyter Notebook050

Happy Hifo NWB Editor

Language:PythonGPL-3.0040

A library for exploratory analysis of multivariate mesoscopic neuronal signals

Language:PythonMIT020

Language:MATLAB000