Ken Wang 's repositories
NetID_package
A scalable method to infer fate specific gene regulatory network from single cell gene expression data
ENIGMA_test
test ENIGMA installation
LowpassingHM
Improve your single cell gene expression heatmap with one function
MouseGerm_DDX43
All datasets include analyzed scRNA-seq, peak files called from eCLIP-seq datasets, and spliced/unspliced readouts of single cell. And codes for reproducing main results of study
cellrank
CellRank for directed single-cell fate mapping
CIDER
R package CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation
ENIGMA_0.1
This repo is for testing the new version of ENIGMA
ENIGMA_test2
test the newest package of ENIGMA
graphlayouts
new layout algorithms for network visualizations in R
motifmatchr
Fast motif matching in R
scarches
Reference mapping for single-cell genomics
scvelo
RNA Velocity generalized through dynamical modeling
scvi-tools
Deep probabilistic analysis of single-cell omics data
scVI_vampPrior
A new scVI model with vampPrior
seurat
R toolkit for single cell genomics
SpiceMix
spatial transcriptome, single cell
tabula-sapiens
Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens