Biomedical Imaging Group's repositories
GlobalBioIm
A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging
DeconvolutionLab2
Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
OrientationJ
ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection
PSFGenerator
A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)
interactive-kit
A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.
image-access
A class for the didactic implementation of image-processing algorithms in JavaScript.
EDF-Extended-Depth-of-Field
An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.
Steer-n-Detect
ImageJ plugin - Steerable Template Detector
Continuous_FRC_SMLM
Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)
Multi-Kernel-Regression-gTV-
The accompanying codes of the paper "Multi-Kernel Regression with Sparsity Constraint"
CryoEM-Joint-Refinement
Joint angular refinement and reconstruction algorithm for single-particle Cryo-EM.
SingleCellClassifier
Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.
Interactive-Cell-Lineage-Tracer
ImageJ plugin to track and mesure cells. Chiara Toniolo, Daniel Sage