KevinMenden

scaden

Deep Learning based cell composition analysis with Scaden.

breakout-rl

Reinforcement learning for the game Breakout from Atari 2600

tf-activity

Workflow to identify active transcription factors from CAGE-seq data.

bioconda-recipes

Conda recipes for the bioconda channel.

cageseq

CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

camera-trap

Repository containing code for a Raspberry Pi camera trap project.

code4green

Repository for the code4green hackathon

data-model-lib

Libraries providing functionality for the QBiC/openBIS data model

demultiplexing

Quick NextFlow pipeline for demultiplexing samples using cutadapt

EVE

Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

juliaml

Implementations of different algorithms to learn Julia

metadata-model-specification

QBiC's metadata model specification

mlf-core

Reproducible machine learning pipelines using mlflow.

mlfcore-test

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

nf-co.re

Files for the main nf-core website >>>

nf-core-testpipeline

A pipeline for testing

rimod-ftd

rl-playground

Implementation and testing of different RL algorithms.

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

sensor-hub

Repository to monitor sensor data taken with a Raspberry pi.

simple-qc

Simple pipeline for just running a quick QC on RNA-seq data

smrnaseq

A small-RNA sequencing analysis pipeline

test-datasets

Test data to be used for automated testing with the nf-core pipelines

testpipe

testpipeline

A small example pipeline used to test new nf-core infrastructure and common code.

tools

Python package with helper tools for the nf-core community.

viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

wenda

Weighted elastic net for domain adaptation.