ajitjohnson

Ajit Johnson Nirmal's repositories

imsig

Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

Language:R25 3 19

arseq

An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)

Language:R9 3 7

mcmicro-nf

Nextflow prototype for mcmicro

Language:NextflowMIT100

mipy

Image Analysis Work Flow

Language:PythonMIT1 10

Rscripts

A collection of R scripts used during my PhD

Language:RMIT1 10

ajitjohnson.github.io

Blogging site run with jekyll

Language:CSSMIT010

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Language:PythonMIT000

Jupyter-Notebooks

A collation of my various projects at Dana-Farber cancer institute and Harvard medical school

Language:Jupyter NotebookMIT010

mcmicro

Multiple Choice Microscopy

Language:CSSMIT000

Detectron

FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.

Language:PythonApache-2.0010

IMAAP

Annotation and Analysis of Multiplexed Imaging Data

Language:RMIT000

ML-For-Beginners

12 weeks, 24 lessons, classic Machine Learning for all

MIT000

oneliners

Useful bash one-liners for bioinformatics.

000

python_for_microscopists

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

Language:Jupyter Notebook000

PythonScripts

A cumulation of different project scripts

Language:Jupyter NotebookMIT010

pytorch-3dunet

3D U-Net model for volumetric semantic segmentation written in pytorch

MIT000

scimap_tutorials

Tutorial contents for using scimap.xyz

Language:Jupyter NotebookMIT020

single_cell_intestine

R code for single-cell analysis of intestinal epithelial cells

Language:R010

uxdigi

:sparkles: Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

Language:HTMLMIT000