dna-seq

There are 0 repository under dna-seq topic.

Phillip-a-richmond / GenomeAnalysisModule
Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
genomics genome bioinformatics vancouver bcchr richmond ubc evidence2innovation bwamem short-read dna-seq dnaseq workshop bc-children-hospital genetic genetic-counselling
Language:HTML 24
fhidalgor / mutagenesis_visualization
Software for the analysis and visualization of site-saturation mutagenesis experiments
mutagenesis deepsequencing sitesaturation fastq-files enrichment-scores mutagenesis-visualization dna-seq
Language:Python 15
luuloi / AppliedBioinformatics2023
"Applied bioinformatics" is a course for Genetics Master Program at Genetics Department
bioinformatics bulk-rna-seq dna-seq
Language:R 9
yhoogstrate / bam-lorenz-coverage
Generate Lorenz plots and Coverage plots directly from BAM files
wgs ngs quality-control rna-seq dna-seq lorenz ginicoverage
Language:Python 9
icgc-argo-workflows / dna-seq-processing-wfs
ICGC ARGO DNA-Seq Processing Workflow
bioinformatics cancer-genomics nextflow dna-seq workflow
Language:Nextflow 5
skchronicles / Docker
Collection of Dockerfiles for bioinformatics tools
docker bioinformatics rna-seq chip-seq dna-seq scrna-seq atac-seq
Language:Dockerfile 3
cutseq
y9c / cutseq
✂️ Trim sequencing adapters from NGS data automatically
adapter barcode bioinformatics cutadapt dna-seq ngs rna-seq umi
Language:Python 3
LUMC / rna_cd
Detect RNA contamination in human Illumina DNA-seq experiments
ngs dna-seq bioinformatics quality-control
Language:Python 2
sandialabs / CasCollect
A pipeline for the detection of Cas genes and CRISPR arrays from unassembled raw illumina sequencing reads
crispr protein dna rna dna-seq seed-expansion scr-2420
Language:Python 2
clbenoit / CutOneStrand
This tool is designed to scan all positions on a gene than can be used to specifically cut one DNA strand using a given cas9.
autosomal bioinformatics crispr-cas9 dna-seq genomics polymorphism screening
Language:Shell 1
clbenoit / filt3r.shiny
R Shiny app encapsulating FilLT3r tool : https://doi.org/10.1186/s12859-022-04983-6
bioinformatics dna-seq genomics shinyapps acute-myeloid-leukemia
Language:R 1
Marcrockhat / imprintia
This is a repository for a pipeline used to identify imprinted genes or allele specific expressions using Illumina next generation sequencing (NGS) platform. This repository contains a work in progress to identify imprinted genes in polyploid species.
snp-call species rna-seq-data dna-seq pipeline gene
Language:R 1
clbenoit / GermlineVarDB
R Shiny app for germline genomic variants interpretation. The tool suite to deal with the underlying local structured database is provided here : https://github.com/clbenoit/GermlineVarDBTools
bioinformatics dna-seq genomics germline-variants shiny-apps variant-analysis database
Language:R 0
clbenoit / SomaVarDB
R package containing a R Shiny app for somatic genomic variants interpretation and a tool suite to deal with an underlying local structured database.
bioinformatics dna-seq shiny-apps shinydashboard somatic-variants variant-analysis database-management
Language:R 0
Lukas0025 / sdcsim
Strand Displacement Cascades simulator
dna dna-computing dna-seq simulation stochastic-simulation
Language:C++ 0
qiyoyou / DNA-seq
DNA-seq Data process (example from real case)
dna-seq
0
rodriguez-salarichs / vecscreen_extract
Program extracts a valuable information from an output vecscreen file
fortran ngstools dna-seq rna-seq
Language:Roff 0
wckdouglas / liftover_bam
bam-files dna-seq ngs-analysis rna-seq
Language:Python
YuqiZ2020 / Coursera-DNA-Seq
Homework submissions and copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
dna-seq algorithms coursera
Language:Jupyter Notebook

dna-seq

Phillip-a-richmond / GenomeAnalysisModule

fhidalgor / mutagenesis_visualization

luuloi / AppliedBioinformatics2023

yhoogstrate / bam-lorenz-coverage

icgc-argo-workflows / dna-seq-processing-wfs

skchronicles / Docker

y9c / cutseq

LUMC / rna_cd

sandialabs / CasCollect

clbenoit / CutOneStrand

clbenoit / filt3r.shiny

Marcrockhat / imprintia

clbenoit / GermlineVarDB

clbenoit / SomaVarDB

Lukas0025 / sdcsim

qiyoyou / DNA-seq

rodriguez-salarichs / vecscreen_extract

wckdouglas / liftover_bam

YuqiZ2020 / Coursera-DNA-Seq