trimgalore

There are 1 repository under trimgalore topic.

fmalmeida / ngs-preprocess
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
ngs-preprocess illumina pacbio nextflow pipeline trimgalore nanopack bax2bam porechop reproducible-research reproducible-science pacbio-ccs bioinformatics ngs workflow
Language:Nextflow 28
digo4 / Clinical-Genomics
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
bcftools bowtie2 bwa-mem cutadapt fastp fastqc freebayes gatk-bestpractices gatk-cnv gatk-joint-variant-calling-workflow gatk4 gatk4-haplotypecaller picard samtools trimgalore trimmomatic varscan
Language:Shell 13
PulmonomicsLab / mcdr-mtb-standalone
Multi-class classification of drug resistance in MTB clinical isolates
bwa-mem caret diagnostics drug-resistance-prediction freebayes machine-learning multi-class-classification mycobacterium-tuberculosis prediction r-programming samtools shell-script svm trimgalore variant-calling vcf whole-genome-sequencing
Language:Shell 0
hisplan / trimgalore
trimgalore modified version for prism
trimgalore
Language:Perl