pseudogene

lava-dna

LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)

genetic-mapper

SVG Genetic Map Drawer

radmap

Analyse RAD-tags and generate the Genetic Map with GWAS

lamp-virus

Pipeline to develop one-step real-time RT-LAMP assays for specific detection of virus

ora

Olfactory Receptor family Assigner (bioperl module)

docker-stacks

Stacks is a software pipeline for building loci from short-read sequences - Now in a Docker

lamp-denv

Scripts and tools used to develop one-step real-time RT-LAMP assays for specific detection of dengue virus.

scholar.py

A parser for Google Scholar, written in Python

contiguator

A bacterial genomes finishing tool for structural insights on draft genomes - Now in a Docker

gridref

Convert Irish/British Grid Reference points to WGS84

anno

Anno is a variant annotation tool

busco-docker

Busco in a Docker

faststructure-docker

Docker image to run fastSTRUCTURE (Raj et al. 2014)

fish_pedigree

Pedigree Chromosome Drawer

lice-mitochondria

Scripts and tools used to analyse mitochondrial sequence variations between to strain of sea-lice (Lepeophtheirus salmonis)

rad-scripts

Various RAD-seq related scripts

ratt

RATT: Rapid Annotation Transfer Tool (Wellcome Trust Sanger Institute)

vibrio-tnseq

Tn-seq pipeline for Vibrio sp.

virus_genomes

Collect Virus genomes from "NCBI assembly" database (internal)

aquaexcel

Introductory Bioinformatic Course to Sequencing Data Processing

Bio-InterProScanWrapper

Corrochano-Fraile_et_al_2023

This companion repository records, in a reproducible manner, all of the steps taken when assessing the performance of the method presented in Corrochano-Fraile et al. 2023.

galaxy

Galaxy shed

Genome-annotation-pipeline

Genome annotation

iron_cache_python

qdd-docker

User-friendly computer program for microsatellite selection and primer design revisited - Now in a Docker

ra

Assembler for raw de novo genome assembly of long uncorrected reads.

sandbox

work place for new or broken containers

seq-align

Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment

training