Chris Fields (cjfields)

cjfields

Geek Repo

Company:@HPCBio @h3abionet @OBF @IGBIllinois @bioperl

Location:University of Illinois UC

Home Page:hpcbio.illinois.edu

Twitter:@cjfields

Github PK Tool:Github PK Tool


Organizations
bioperl
biosql
GMOD
HPCBio
OBF

Chris Fields's repositories

bioperl6

reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)

Language:Perl 6License:Artistic-2.0Stargazers:48Issues:10Issues:9

biome

An experimental Moose-based BioPerl implementation

Bio-Tools-Primer3Redux

A reimplementation of BioPerl's Primer3-related code for primer3 v1 and v2

microbiome_helper

An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.

Language:PerlLicense:GPL-3.0Stargazers:2Issues:1Issues:0

NGI-RNAseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Language:GroovyLicense:MITStargazers:2Issues:2Issues:0

p6-Bio-HTSLib

Perl6 NativeCall bindings to htslib

Language:Perl6License:Artistic-2.0Stargazers:2Issues:2Issues:0

Bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Language:C++License:GPL-3.0Stargazers:1Issues:1Issues:0

Bio-HTS

Source for the CPAN Bio::DB::HTS module. Perl adaptors into the HTSlib library.

Language:PerlLicense:Apache-2.0Stargazers:1Issues:2Issues:0

Bio-Root-MOP

Moose-based Bio::Root bridge classes (testing for BioPerl)

Language:PerlStargazers:1Issues:2Issues:0

bioinformatics

Tools for bioinformatics

bold

Interface to the Bold Systems barcode webservice

Language:RLicense:NOASSERTIONStargazers:1Issues:0Issues:0

bp6-bug

Lexical loading bug?

Language:Perl6Stargazers:1Issues:2Issues:0

common-workflow-language

Repository for CWL Specifications. Use https://www.biostars.org/t/cwl/ for support.

Language:PythonLicense:Apache-2.0Stargazers:1Issues:2Issues:0

datasciencecoursera

Temp repo for Data Science Toolbox course

License:LGPL-3.0Stargazers:1Issues:2Issues:0

genomediff-python

GenomeDiff (*.gd) file parser for Python

Language:PythonLicense:MITStargazers:1Issues:2Issues:0

github-paper

Plos in Computational Biology paper related with github for researchers, code, source and document

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:1Issues:2Issues:0

p6-Bio-Samtools

Perl6 binding to samtools

Language:Perl6License:BSD-2-ClauseStargazers:1Issues:2Issues:0

p6-Crypt-Bcrypt

Bcrypt password hashing in Perl6

Language:CLicense:ISCStargazers:1Issues:2Issues:0

p6-File-Temp

Simple implementation of File::Temp for creating temporary files

Language:PerlStargazers:1Issues:2Issues:0

panda

Perl 6 module management solution, -Ofun

Language:Perl6License:MITStargazers:1Issues:2Issues:0

redmine2github

Scripts to migrate redmine tickets to github issues

Language:PythonLicense:MITStargazers:1Issues:2Issues:0

bosc_materials

Misc. documents for the Bioinformatics Open Source Conference (BOSC), https://www.open-bio.org/events/bosc/

Language:TeXStargazers:0Issues:1Issues:0

H3ABionet-SOPs

Standard operating procedures for H3ABionet data processing and analyses

Language:HTMLStargazers:0Issues:0Issues:0
Language:NextflowStargazers:0Issues:0Issues:0

obf-docs

Official documents of the Open Bioinformatics Foundation

Language:HTMLStargazers:0Issues:0Issues:0

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

Language:RStargazers:0Issues:0Issues:0
Stargazers:0Issues:1Issues:0

samblaster

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

Language:C++License:MITStargazers:0Issues:0Issues:0

sig-bio-shiny

A standalone R shiny application for doing significant biology on a set of genes

Language:RLicense:MITStargazers:0Issues:0Issues:0

test-actions

Short-lived repo to test actions

Stargazers:0Issues:1Issues:0