mitochondrial

There are 2 repositories under mitochondrial topic.

• linzhi2013 / MitoZ

  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

  mitozmitochondrialgenome-assemblymitochondrion
  Language:Shell 113

• caleblareau / mgatk

  mgatk: mitochondrial genome analysis toolkit

  mitochondrialgenotypegenomicssingle-cellepigeneticspython3r
  Language:Python 98

• BFL-lab / Mfannot

  MFannot is a program for the annotation of mitochondrial and plastid genomes

  genomemitochondrialerpinhmmerblastmusclepipelinebioperldocker-containerumactbl2asn
  Language:Perl 15

• quxiaojian / OGA

  Organelle Genome Assembler

  assemblychloroplast-genomeplastomemitochondrialgenomeorganelle
  Language:Perl 9

• Runsheng / mitovar

  Mitochondrial DNA sequence assembly and annotation for nematodes using NGS data.

  ngs-datamitochondrialmtdna
  Language:Python 4

• aurora-mareviv / mthapower

  Sample size and power for association studies involving mitochondrial DNA haplogroups -

  mitochondrialgeneticsdnahaplogroupsample-size
  Language:R 3

• quxiaojian / get_cp_and_mt_genes_from_contigs_of_genome-skimming_or_transcriptome_data

  get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data

  plastometranscriptomeprotein-coding-genesgenome-skimmingmitochondrialchloroplastgenomecontigs
  Language:Perl 3

• lirepo / MLIA

  Mitochondrial Long-read Iterative Assembly

  assemblycanugenomegenome-assemblyinterativelong-readsminimap2mitochondrialmitochondrionpacbio
  Language:Python 2

• munizmom / mitochondrial-dysfunction-analyses-from-scRNASeq

  mitochondrialscrnaseq
  Language:R 1

• Nirmal2310 / Mitochondrial_Benchmarking_study

  This repository contains the codes and additional data utilized in the benchmark study of short read based mitochondrial assemblers for human datasets

  benchmarkmitochondrial
  Language:R 1

• dzhang32 / ATG7_RNAseq

  Analysis of rare disease patients with ATG7 mutations

  mitochondrialrare-diseaserna-seq-analysis
  Language:HTML 0

• filcfig / PCP

  PrecisionCallerPipeline (PCP) automatically takes Precision ID mtDNA Whole Genome Panel (Thermo Fisher Scientific, USA) FASTQ files and outputs BAM files correctly aligned to the rCRS.

  mitochondrial-variantsmitochondrial-sequencesmitochondrialmitochondrial-genomesmitochondrial-genes
  Language:Shell 0

• chop-dbhi / mcmanus_ant1

  RNA-Seq analysis for "Mitochondrial DNA Variation Dictates Expressivity and Progression of Nuclear DNA Mutations Causing Cardiomyopathy"

  rna-seqsnakemakebioconductormousemitochondrial
  Language:HTML