batch-correction

There are 0 repository under batch-correction topic.

theislab / scarches
Reference mapping for single-cell genomics
single-cell deep-learning rna-seq-analysis data-integration batch-correction multimodal-deep-learning multiomics single-cell-genomics scrna-seq human-cell-atlas
Language:Jupyter Notebook 321
kharchenkolab / conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
batch-correction scrna-seq single-cell-rna-seq
Language:R 190
sccomp
MangiolaLaboratory / sccomp
Testing differences in cell type proportions from single-cell data.
bayesian composition cytof microbiome r-package single-cell proportions batch-correction differential-proportion unwanted-variation multilevel random-effects
Language:R 84
dpeerlab / Harmony
Harmony framework for connecting scRNA-seq data from discrete time points
scrna-seq scrna-seq-analysis mnn batch-correction developmental-trajecotries
Language:Jupyter Notebook 44
quadbio / simspec
Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
batch-correction single-cell-analysis
Language:R 27
sdomanskyi / DigitalCellSorter
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
identification visualization clustering gene transcriptomics single-cell-sequencing-analysis automatic-cell-identification anomaly-detection cancer-heterogeneity python quality-control batch-correction
Language:Python 22
batchelor
LTLA / batchelor
Clone of the Bioconductor repository for the batchelor package.
human-cell-atlas single-cell-rna-seq batch-correction bioconductor-package
Language:R 16
CCBR / MAAPster
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
microarray-data-analysis transcriptomics quality-control differential-expression batch-correction pathway-analysis
Language:R 9
metamaden / methyPre
Methylation array preprocessing.
preprocessing qc methylation-arrays hg19 minfi bioconductor illumina-bead-chip hm450k sva combat batch-correction cpg normalization swan-normalize illumina-normalize
Language:R 5
condo-adapter
calvinmccarter / condo-adapter
Confounded Domain Adapter
machine-learning statistics batch-correction domain-adaptation
Language:Jupyter Notebook 4
pughlab / cancer-scrna-integration
A comparison of data integration methods for single-cell RNA sequencing of cancer samples
cancer single-cell-rna-seq single-nuclei-rna-sequencing data-integration batch-correction bioinformatics cancer-genomics single-cell
Language:Jupyter Notebook 4
Catchxu / STANDS
Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS
anomaly-detection batch-correction bioinformatics generative-adversarial-network subtyping
Language:Python 3
edwinv87 / feats
A Python tool for performing downstream analysis on Single-Cell RNA-seq datasets
single-cell clustering outlier-detection batch-correction
Language:Python 3
GwangWooKim / saVAE
A similarity-assisted variational autoencoder (saVAE) is a new method that adopts similarity information in the framework of the VAE.
batch-correction covariate-adjustment deep-learning dimensionality-reduction single-cell-rna-seq umap variational-autoencoder
Language:Python 3
kAI-swa / M2ASDA
Manipulate scRNA-seq data with GSASD
scrna-seq-analysis anomaly-detection batch-correction bioinformatics subtyping
Language:Python 3
mandricigor / batman
Batman: Batch effect correction via minimum weight MAtchiNg
single-cell batch-correction integration minimum-weight-matching
Language:Python 3
ebi-gene-expression-group / selectBCM
An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))
batch-correction bulk-rna-seq gene-expression microarray-data-analysis
Language:R 2
massSight
omicsEye / massSight
An R package for the alignment and scaling of LC-MS metabolomics data
batch-correction metabolomics omics r
Language:R 2
Sarah145 / batch_correct
Comparison of batch correction methods for scRNA-seq data - basically a clone of BatchBench
scrna-seq-analysis batch-correction
Language:R 2
computational-metabolomics / sbcms
:warning: :no_entry_sign: [DEPRECATED] see README for more details.
metabolomics data-processing batch-correction mass-spectrometry lc-ms dims
Language:HTML 1
fanzhanglab / inflamedtissue_covid19_reference
Code for Zhang, et al, Genome Medicine, 2021. Cross-disease tissue data integration on single-cell transcriptomics
batch-correction metadata-analysis single-cell-rna-seq disease-association-testing tissue-infammation
Language:Jupyter Notebook 1
redpanda185 / Harmony_GenePattern_Wrapper
Wrapper Script for Harmony designed to work with GenePattern Module Integrator
harmony batch-correction genepattern-module rna-seq
Language:R 0
Catchxu / M2ASDA
Detecting and subtyping anomalous single cells with M2ASDA
anomaly-detection batch-correction bioinformatics generative-adversarial-network subtyping
Language:Python
Finsam / NASA-GeneLab-Dataset-Aggregation
Scripts from Summer 2020 NASA GeneLab Dataset Correction project.
genelab batch-correction
Language:R
genepattern / Seurat.IntegrateData
GenePattern module which implements the batch correction algorithm within Seurat.
genepattern-module seurat seurat-objects batch-correction data-integration
Language:R