Sarah Ennis's repositories
scRNA_pre_process
Processing scRNA-seq data with kallisto|bustools pipeline
bone_marrow_analysis
Analysis of public and unpublished scRNA-seq data from bone marrow donors
batch_correct
Comparison of batch correction methods for scRNA-seq data - basically a clone of BatchBench
CRT_tutorial
Single-cell RNA-seq analysis tutorial for the Cancer Genomics session of the CRT RTP (year 3)
Data-Science-For-Life-Science
CRT outreach program to assist life scientists in learning basic data science skills.
epigenomics_case_study
Code to reproduce analysis and figures for 'A multi-omics approach to characterising the immune cell landscape in renal cell carcinoma'
MSc_Project
Work for my MSc thesis - 'Characterising transcriptional variation in tissue-resident macrophage subsets using sc-RNA-seq'
MyGNome
Project for CRT Ideas Week 2019
SarahSeq
R Shiny app for analysing personal genomics data
scib
Benchmarking analysis of data integration tools
scriabin
Analysis of cell-cell communication at single-cell resolution
tissue_detector
Cancer as a tissue anomaly: classifying tumor transcriptomes based only on healthy data