LTLA

SingleR

Clone of the Bioconductor repository for the SingleR package.

umappp

UMAP C++ implementation

celldex

Collection of cell type reference datasets.

scRNAseq

Clone of the Bioconductor repository for the scRNAseq package.

batchelor

Clone of the Bioconductor repository for the batchelor package.

CppIrlba

A C++ port of the IRLBA algorithm, based on the C code in the R package.

scran.chan

A slimmed down version of scran, based on the C++ library of the same name.

scuttle

Clone of the Bioconductor repository for the scuttle package.

libscran

scran, but in C++.

qdtsne

A quick-and-dirty t-SNE implementation as a header-only library

BiocNeighbors

Clone of the Bioconductor repository for the BiocNeighbors package.

BiocSingular

Clone of the Bioconductor repository for the BiocSingular package.

SingleRBook

The package wrapping the book, for deployment via the Bioconductor build system.

ParquetDataFrame

Bioconductor-friendly bindings for Parquet files.

csaw

Clone of the Bioconductor repository for the csaw package.

gesel.js

Client-side gene set queries.

metapod

Clone of the Bioconductor repository for the metapod package.

aggregate-demonstrator

Demonstration of how to vendor aggregateAcrossCells

csawBook

The book of the package.

gesel-manuscript

Manuscript for the gesel NPM package.

basilisk-manuscript

Manuscript for the basilisk package

emcmake-docker

Docker image for Emscripten + Cmake

irlba

Fast truncated singular value decompositions

LTLA

mumosa

Clone of the Bioconductor repository for the mumosa package.

Rcpp

Seamless R and C++ Integration

reticulate

R Interface to Python

ScaledMatrix

Clone of the Bioconductor repository for the ScaledMatrix package.

TrajectoryUtils

Clone of the Bioconductor repository for the TrajectoryUtils package.

TSCAN

Clone of the Bioconductor repository for the TSCAN package.