CCR Collaborative Bioinformatics Resource (CCBR)

CCR Collaborative Bioinformatics Resource

CCBR

Geek Repo

CCR Collaborative Bioinformatics Resource, Center for Cancer Research (NCI), National Institutes of Health

Location:United States of America

Home Page:https://bioinformatics.ccr.cancer.gov/ccbr/

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CCR Collaborative Bioinformatics Resource's repositories

Dockers

A collection of Dockerfiles to facilitate reproducibility across computing environments.

CARLISLE

Cut And Run Analysis Pipeline

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METRO

Mouse nEoanTigen pRedictOr

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CCBR_SnakemakeTemplate

Barebones framework for creating new snakemake workflows.

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RENEE

A comprehensive quality-control and quantification RNA-seq pipeline

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CCBR_NextflowTemplate

CCBR template for Nextflow workflows

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CHARLIE

Circrnas in Host And viRuses anaLysis pIpEline for Detection Annotation Quantification of circRNAs

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reneeTools

R helper functions for RENEE

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Tools

Tools created by CCBR/NCBR members

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XAVIER

An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

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.github

organizations readme

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ASPEN

CCBR pipeline for preliminary QC and peak calling from ATACseq datasets

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bioinfo-pf-curie-chip-seq

Nextflow pipeline for ChIP-seq data quality controls and analysis

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CCBR_tobias

Tobias implementation for ATAC seq data.

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CHAMPAGNE

CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

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chromVAR

chromatin Variability Across Regions (of the genome!)

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CRISPIN

CRISPR screen pipeline

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DSP_Analysis

A repository for general information and analysis templates for Nanostring's Digital Spatial Profiling

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l2p

List to pathway, or l2p, is an R package for gene set enrichment analysis that is optimized for speed.

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nf-modules

Reusable modules and subworkflows for CCBR nextflow pipelines

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nf-sandbox

a repo for testing and toying with nextflow

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nfcore_methylseq

nf-core Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

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parkit

Park folders or tarballs into HPCDME

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TRANQUIL

TRANQUIL (TRna AbundaNce QUantification pIpeLine)

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