JackieZhai

SiamBOMB

SiamBOMB: Siamese network using Background information for real-time Online Multi-species home-cage animal Behavioral analysis. (Updating)

awesome-vem-datasets

Open source volume electron microscopy (vEM) datasets for connectomics.

SALEM2

SALEM^2: Segment Anything in Light and Electron Microscopy via Membrane Guidance

awesome-behavior-datasets

Open-source datasets for animal behavioral video analysis.

CodeFocalPoint

The new/realistic version of repo TouchedFocalPoint.

JackieZhai.github.io

The source of "https://haozhai.site/".

sam-hq

Segment Anything in High Quality (in 3D Volume?)

awesome-fm-datasets

Open source datasets for fluorescence microscopy (e.g., confocal, lightsheet, two/three-photon)

Awesome-Neuron-Segmentation-in-EM-Images

A curated list of resources for 3D segmentation of neurites in EM images

awesome-video-object-segmentation

:sunglasses: Awesome Video Object Segmentation

cloud-files

Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

II-CATS

Intra- and Inter-Cellular Awareness for 3D Neuron Tracking and Segmentation in Large-Scale Connectomics

ccf-deadlines

⏰ Collaboratively track deadlines of conferences recommended by CCF (Website, Python Cli, Wechat Applet) / If you find it useful, please star this project, thanks~

cloud-volume

Read and write Neuroglancer datasets programmatically.

CodeNeuroglancerTutorial

Codes for Neuroglancer 101

CodeSparsePrecomputed

Convert sparsely stored 2D images to 3D precomputed fastly.

corgie

Command line tool for registration of very large 3D volumes.

fastmorph

Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.

flops-counter.pytorch

Flops counter for convolutional networks in pytorch framework

Heavy_tailed_connectivity

Code and data used to perform the analyses in the paper "Heavy-tailed neuronal connectivity arises from Hebbian self-organization"

igneous

Python cloud pipeline for Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Remapping, and more.

JackieZhai

JackieZhai.github.io-CDN

The cdn of "https://haozhai.site/".

jekyll-theme-chirpy

A minimal, responsive, and powerful Jekyll theme for presenting professional writing.

lsd

🌈

MobileSAM

This is the official code for MobileSAM project that makes SAM lightweight for mobile applications and beyond!

mutex-watershed

The mutex watershed for image segmentation.

neuroglancer

WebGL-based viewer for volumetric data

pytracking

Visual tracking library based on PyTorch.

SynapseCLR

A contrastive learning framework for 3D electron microscopy data