nsalomonis

Nathan Salomonis's repositories

altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

Language:PythonApache-2.0104 15 54

Human-Bone-Marrow-Titration-Atlas

An Immunophenotypic and Transcriptomic Human Bone Marrow Atlas

Language:PythonApache-2.0900

BAM-to-Junction-BED

Uses SAMTools, Python 2.7 and PySam to extract either junctions or exon read counts for known and novel junctions and exons. Requires an indexed BAM file with genomic coordinates

Language:PythonApache-2.05 30

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

MIT3 20

kallisto-splice

Modification of kallisto 0.43.1 for identifying splice junctions

Language:CNOASSERTION010

LineageProfilerIterate

Sample Classification and Model Evaluation in LineageProfiler

Language:Python020

scRNA-tools

Table of software for the analysis of single-cell RNA-seq data.

Language:RMIT020

SNAF

Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation

Language:PythonMIT010